CF504044
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 5.566e-38 Identity = 71/110 (64.55%), Postives = 90/110 (81.82%), Query Frame = 1 Query: 34 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 A A++ Q +MVAPFTGLK+++AFP TKK N +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++ L KE++YL+R+ W+PCLEFELE G+VYRE+ SPGYYDG Sbjct: 6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDG 114
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 5.566e-38 Identity = 76/121 (62.81%), Postives = 95/121 (78.51%), Query Frame = 1 Query: 1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 SSM++S A A RA AQ+SMV PF +SS FPAT+K NN+++++ NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF E G+VYRE+H SPGYYDG Sbjct: 3 SSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDG 120
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 7.269e-38 Identity = 74/119 (62.18%), Postives = 94/119 (78.99%), Query Frame = 1 Query: 7 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 M+S+A VA R AQ +MV F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF E G+VYRE++ SPGYYDG Sbjct: 2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDG 116
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.980e-35 Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 1 Query: 7 MISSATVATA--NRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 M SS V+TA +R S AQ++MV PF GL SS+AFP T+K D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E++YLIR+GWIPC+EF + G+VYRE+H SPGYYDG Sbjct: 1 MASSMMVSTAAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDG 119
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 5.391e-33 Identity = 63/104 (60.58%), Postives = 85/104 (81.73%), Query Frame = 1 Query: 52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 + A+ VAPF GLKS++ P ++++N S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF + G+++REH+ SPGYYDG Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDG 109
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.201e-32 Identity = 61/104 (58.65%), Postives = 82/104 (78.85%), Query Frame = 1 Query: 52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 + A+ VAPF GLKS++ P ++++N SNGGR++CM+VWP G+KKFETLSYLPPLS E LLK+++YLIRS W+PCLEF + G+++REH+ SPGYYDG Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDG 110
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32 Identity = 63/104 (60.58%), Postives = 83/104 (79.81%), Query Frame = 1 Query: 52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 + A+ VAPF GLKS++ P + ++ + S SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF + G+V+REH+ SPGYYDG Sbjct: 8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDG 110
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32 Identity = 62/104 (59.62%), Postives = 81/104 (77.88%), Query Frame = 1 Query: 52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDG Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDG 110
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32 Identity = 62/104 (59.62%), Postives = 81/104 (77.88%), Query Frame = 1 Query: 52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDG Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDG 110
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 2.049e-32 Identity = 62/104 (59.62%), Postives = 82/104 (78.85%), Query Frame = 1 Query: 52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363 + A+ VAPF GLKS++ P ++++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDG Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDG 110 The following BLAST results are available for this feature:
BLAST of CF504044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504044 ID=CF504044; Name=CF504044; organism=Citrus sinensis; type=EST; length=378bpback to top |