CF504050

Overview
NameCF504050
Unique NameCF504050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504050 vs. ExPASy Swiss-Prot
Match: GSTT2_HUMAN (Glutathione S-transferase theta-2 OS=Homo sapiens GN=GSTT2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 3 
Query:   99 LKLYSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP-LLPSDLKRKA 368
            L+L+    S  S  V I     G+  E + V+LVKG+  S +FL+IN +G +P L DGDF++++S AIL+YL  KY  P    PSDL+ +A
Sbjct:    3 LELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARA 93
The following BLAST results are available for this feature:
BLAST of CF504050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GSTT2_HUMAN5.702e-1142.86Glutathione S-transferase theta-2 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-538 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504050 ID=CF504050; Name=CF504050; organism=Citrus sinensis; type=EST; length=574bp
CTTTGCTGATTATAAGAAGGCAGAAGTGTTAGGTCAGTCTCTTCAATCTG
CAGTGCTTGTGTAGTCTGGTCAGAGACAGAACCTGTTGATAAAACATGCT
GAAACTGTATTCATACTGGAGGAGTTCATGCTCACATCGTGTCAGAATTG
GTCTCAACTTGAAAGGGTTAGAATATGAGTACAAAGCAGTTAACTTGGTG
AAAGGAGAGCAATTCAGTCCTGATTTTTTGAAGATCAACCCTATTGGCTA
TGTGCCGGCTTTGGTTGATGGAGATTTTGTTGTATCTGATTCTTTTGCCA
TTTTAATGTACCTGGAAGAGAAGTATCCTCAGCCTCCATTGTTGCCTTCT
GATCTTAAGAGAAAAGCTATCAATTATCAGGCTGCAAATATTGTTTCCTC
GAGCATACAGCCTCTTCAGAATCTTGCAGTAGTGAAGTACATTGAGGAAA
AAGCTGGTGCAGATGAGAGAGATATCTGGGCTAAAACTCACATTGGAAAA
GGCTTTGCGGCACTTGAGAAGCTGCTAAAAGACTATGCTGGGAATATGCA
ACTGGAGATGAAGTTTCCTGGCAG
back to top