CF504052

Overview
NameCF504052
Unique NameCF504052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:288..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALTI (Succinylornithine transaminase OS=Salmonella typhi GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALPC (Succinylornithine transaminase OS=Salmonella paratyphi C (strain RKS4594) GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALPB (Succinylornithine transaminase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P+  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRIGNHKSGIVAFKNAFHGRTLFTVSAGGQPSYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALNS (Succinylornithine transaminase OS=Salmonella newport (strain SL254) GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALHS (Succinylornithine transaminase OS=Salmonella heidelberg (strain SL476) GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALG2 (Succinylornithine transaminase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALEP (Succinylornithine transaminase OS=Salmonella enteritidis PT4 (strain P125109) GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALDC (Succinylornithine transaminase OS=Salmonella dublin (strain CT_02021853) GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALA4 (Succinylornithine transaminase OS=Salmonella agona (strain SL483) GN=astC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_XANCP (Acetylornithine aminotransferase OS=Xanthomonas campestris pv. campestris GN=argD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 56/150 (37.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:   31 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRP-NKKKFIARQKSYHGSTLIAASLSGLPALHQKFD-LPAPF 471
            +V+E+ +GS V+D  G++YLD  +G+  + LG ++P L+AA T Q   L  +H+     + P L LA+EL+   TAS+ A KVF  NSG+EAN+  +KLV  + ++ GRP +K+  +  + S+HG TL + + +  P   + ++ LP  F
Sbjct:   24 VVLERGQGSRVWDDQGREYLDLSSGIAVSGLGHNDPDLMAALTEQAGKL--WHTSNVFFSAPPLKLAEELV---TASRFAQKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLASVTATAQPKYQEGYEPLPGGF 168          
The following BLAST results are available for this feature:
BLAST of CF504052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ASTC_SALTI6.204e-1735.10Succinylornithine transaminase OS=Salmonella typhi... [more]
ASTC_SALPC6.204e-1735.10Succinylornithine transaminase OS=Salmonella parat... [more]
ASTC_SALPB6.204e-1735.10Succinylornithine transaminase OS=Salmonella parat... [more]
ASTC_SALNS6.204e-1735.10Succinylornithine transaminase OS=Salmonella newpo... [more]
ASTC_SALHS6.204e-1735.10Succinylornithine transaminase OS=Salmonella heide... [more]
ASTC_SALG26.204e-1735.10Succinylornithine transaminase OS=Salmonella galli... [more]
ASTC_SALEP6.204e-1735.10Succinylornithine transaminase OS=Salmonella enter... [more]
ASTC_SALDC6.204e-1735.10Succinylornithine transaminase OS=Salmonella dubli... [more]
ASTC_SALA46.204e-1735.10Succinylornithine transaminase OS=Salmonella agona... [more]
ARGD_XANCP6.204e-1737.33Acetylornithine aminotransferase OS=Xanthomonas ca... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504052 ID=CF504052; Name=CF504052; organism=Citrus sinensis; type=EST; length=619bp
GCTGGGTGGCAGAGTACTGATGTGCATCCACTGGTTATAGAAAAGTCTGA
GGGTAGTTATGTTTACGACGTCAATGGGAAGAAGTATCTTGATTCTCTTG
CTGGCCTATGGTGCACAGCACTAGGGGGGAGTGAACCTCGCCTTGTGGCT
GCTGCTACTGCACAATTGAATACCCTGCCATTTTACCACTCCTTCTGGAA
TCGTACCACAAAACCTTCTCTGGATCTTGCAAAGGAGCTTTTAGAAATGT
TTACCGCAAGTAAAATGGCCAAGGTTTTCTTTACTAATAGTGGATCAGAA
GCCAATGACACTCAGGTCAAGCTGGTTTGGTATTACAATAATGCTCTTGG
AAGACCAAACAAAAAGAAATTTATCGCACGACAAAAATCGTACCATGGTT
CAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCCAGCTTTGCACCAAAAA
TTTGATCTGCCGGCTCCCTTCGTATTGCACACTGACTGCCCTCATTATTG
GCGCTACGCTCATCCAGGTGAGACAGAGGAGGAGTATTCAACCAGATTAG
CCACAATTTAGAGGATCTCATTCTCAAAGAGGGACCAGAGACGATTGCTG
CATTTATTGCTGAGCCTGT
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