CF504052

Overview
NameCF504052
Unique NameCF504052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: BIOB_BACTN (Biotin synthase OS=Bacteroides thetaiotaomicron GN=bioB PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 53/192 (27.60%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   13 STDVHPLV-IEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL-SGLPALHQKF--DLPAPFVLHTDCPHYWRYAHPG------ETEEEYSTRLATI 558
            +TD  P+  +++++G+ +   +G+  ++ ++  WC   G + P L  AA  QL+ +  +  F   T  P+++L K LL +   S M K+F+ +SGS A +  +K+   Y  A G+P+K  F+  +  YHG T  A S+   +  +H  F   LP  + +      +    +P       ET E++S  LA +
Sbjct:  336 TTDPLPVYKVKRADGATITLEDGRTLIEGMSSWWCAVHGYNHPVLNQAAKDQLDKMS-HVMFGGLTHDPAIELGKLLLPLVPPS-MQKIFYADSGSVAVEVALKMAVQYWYAAGKPDKNNFVTIRSGYHGDTWNAMSVCDPVTGMHSLFGSSLPVRYFVPAPSSRFDGEWNPDEIIPLRETIEKHSKELAAL 525          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_SYNPX (Acetylornithine aminotransferase OS=Synechococcus sp. (strain WH8102) GN=argD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 456
            PL + +  G +V+D  G+++LD++AG+    LG S+  L  +   QL  L    + +    + +L  A  L++   A     VFF NSG+EAN+  +KL   + +     ++ + +    S+HG TL A S +G P  HQ F+
Sbjct:   35 PLTLVRGRGCWVWDDQGRRHLDAVAGIATDTLGHSDRALRRSLGRQLRRLQHVSNLYRIPEQDAL--ATWLVQHSCADS---VFFCNSGAEANEAAIKLARKHGHLKRGIDRPRILTASASFHGRTLAAVSATGQPRYHQGFE 172          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_BACST (Acetylornithine aminotransferase OS=Bacillus stearothermophilus GN=argD PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = 1
Query:   31 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAK-VFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            + ++ +EG+ V DVNGK+YLD ++G+    LG   P +  +   QLN       +W+ +   ++ + +E+  +  A      VFF NSG+EAN+  +KL      A     + K I  ++S+HG T    + +G   +H  F    P  +H
Sbjct:   13 IAVQSAEGTVVTDVNGKQYLDFVSGIAVCNLGHRHPHVQKSIEQQLN------QYWHVSNLFTIPIQEEVASLLVAHSAGDYVFFCNSGAEANEAALKL------ARKHTGRHKVITFRQSFHGRTFATMAATGQEKVHSGFGPLLPEFIH 151          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: TPA_BILWA (Taurine--pyruvate aminotransferase OS=Bilophila wadsworthia GN=tpa PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.913e-12
Identity = 44/165 (26.67%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   10 QSTDVHPLVIEKSEGSYVYDVNGKKYLDSLAG-LWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP-FVLHTDCPHY 498
            Q  +  P +  K EG  + D++GK YLD+++G +W   +G     +V A   Q+  + ++ +       P++  +++L+       M++V+ +NSGSEAN+   K+V           K   + R + YHG+T+   S  G      ++   AP F    DC  Y
Sbjct:   22 QHKNFEPAIYVKGEGMRITDIDGKTYLDAVSGGVWTVNVGYGRKEIVDAVAKQMMEMCYFANGIGNV--PTIKFSEKLISKMPG--MSRVYLSNSGSEANEKAFKIVRQIGQLKHGGKKTGILYRARDYHGTTIGTLSACGQFERKVQYGPFAPGFYEFPDCDVY 182          

HSP 2 Score: 25.409 bits (54), Expect = 4.913e-12
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  543 QISHNLEDLILKEGPETIAAFIAEP 617
            +++  LE++IL  GP+ + A I EP
Sbjct:  195 KMAKQLEEVILTVGPDELGAVIVEP 219          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 47/149 (31.54%), Postives = 75/149 (50.34%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPAPF 471
            P+V+   +G+ V+D+ G  Y+D  AG+   ++G + P++  A   Q   L   HS     T+  ++LAK L  +   S   +VFF NSG+EAN+  +KL   +        K + IA + S+HG TL   + +G     + F  LP  F
Sbjct:   22 PIVLSHGKGATVWDIEGNSYIDCFAGVAVNSIGHAHPKVALAICHQAQRL--IHSSNIYYTREQVELAKLLTAI---SPHDRVFFANSGAEANEGAIKLARKFT------GKSEIIAAENSFHGRTLATVTATGQKKYSEPFRPLPEGF 159          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: BIOA_HAEIN (Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Haemophilus influenzae GN=bioA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 1
Query:   13 STDVHPLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASL-SGLPALHQKF--DLPAPFVL 477
            S+D+    +E+++G  +   +G++ +D ++  W    G + PRL AAA  QL  +  +  F   T  P+++LA +LL     + + K+FF +SGS A +  +K+   Y +A G   ++KF   +  YHG T  A S+      +H  F   LP  + L
Sbjct:   23 SSDMPLYAVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAAQNQLAKMS-HIMFGGFTHDPAVELA-QLLVQILPNGLDKIFFADSGSVAVEVAMKMAIQYQHAKGEVQRQKFATIRSGYHGDTWNAMSVCDPTTGMHHLFHHSLPVQYFL 178          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_PROMM (Acetylornithine aminotransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=argD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 45/143 (31.47%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFD 456
            P+ + + +G +V+D +G +YLD++AG+   ALG S+  L  +   QL  L    + +    + +L  A  L+E   A     VFF NSG+EAN+  +KL   + +     ++   +    S+HG TL A S +G P  H+ F+
Sbjct:   33 PVTLLRGKGCWVWDDHGHQYLDAVAGIATCALGHSDRALRRSLGQQLKQLQHVSNLYRIPEQEAL--AHWLVENSCADS---VFFCNSGAEANEAAIKLARKHGHRRRGIDRPIILTANSSFHGRTLAAISATGQPNFHKGFE 170          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_SHEON (Acetylornithine aminotransferase OS=Shewanella oneidensis GN=argD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 47/146 (32.19%), Postives = 69/146 (47.26%), Query Frame = 1
Query:   43 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            + EGS V+D  G +++D   G+    LG   P LV A   Q   L  +H     T +P+L+LA +L+    A +   V+F NSG+EAN+  +KL   Y        K + IA  K++HG T    S+ G  A    F      + H
Sbjct:   29 RGEGSRVWDQEGNEFIDFAGGIAVNCLGHCHPALVNALKTQGEKL--WHLSNVMTNEPALELATKLVNSTFAER---VYFANSGAEANEAALKLARRYALEKHGVEKDEIIAFDKAFHGRTFFTVSVGGQAAYSDGFGPKPQSITH 169          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_LISIN (Acetylornithine aminotransferase OS=Listeria innocua GN=argD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 47/147 (31.97%), Postives = 67/147 (45.58%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 468
            P+ I K  G+ V D  GK YLD  +G+    LG     +  A  +QL  +      W+ +      L   + E+ T      VFF NSG+EAN+  +KL   Y        K+K I  +KS+HG T  + S +G   +HQ F    P
Sbjct:   12 PVDIVKGNGTVVKDATGKTYLDFTSGIAVCNLGHCPENVTEAIQSQLANI------WHTSNLYECALQDSVAELITDGTDKLVFFCNSGTEANEAALKLARKYT------GKEKIITFEKSFHGRTFGSMSATGQAKIHQGFGRLVP 146          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_PASMU (Acetylornithine aminotransferase OS=Pasteurella multocida GN=argD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   43 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSG 429
            + +GS+V+D  GK Y+D  +G+   +LG     +V     Q   L  +HS    T++P+L LA +L+E   A    +V F NSG+EAN+  +KL   Y        K K IA ++S+HG TL   S+ G
Sbjct:   26 RGKGSHVWDQQGKDYIDFTSGIAVNSLGHCADEIVDVLKQQSEKL--WHSSNWFTSEPTLALATKLVEKTFAE---RVMFVNSGAEANEAALKLARRYAVDHFGYQKSKIIAFKQSFHGRTLFTVSVGG 149          
The following BLAST results are available for this feature:
BLAST of CF504052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
BIOB_BACTN3.523e-1227.60Biotin synthase OS=Bacteroides thetaiotaomicron GN... [more]
ARGD_SYNPX3.523e-1230.77Acetylornithine aminotransferase OS=Synechococcus ... [more]
ARGD_BACST3.523e-1229.14Acetylornithine aminotransferase OS=Bacillus stear... [more]
TPA_BILWA4.913e-1226.67Taurine--pyruvate aminotransferase OS=Bilophila wa... [more]
ARGD_METTH6.009e-1231.54Acetylornithine aminotransferase OS=Methanobacteri... [more]
BIOA_HAEIN7.848e-1229.75Adenosylmethionine-8-amino-7-oxononanoate aminotra... [more]
ARGD_PROMM7.848e-1231.47Acetylornithine aminotransferase OS=Prochlorococcu... [more]
ARGD_SHEON1.025e-1132.19Acetylornithine aminotransferase OS=Shewanella one... [more]
ARGD_LISIN1.025e-1131.97Acetylornithine aminotransferase OS=Listeria innoc... [more]
ARGD_PASMU1.339e-1135.66Acetylornithine aminotransferase OS=Pasteurella mu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504052 ID=CF504052; Name=CF504052; organism=Citrus sinensis; type=EST; length=619bp
GCTGGGTGGCAGAGTACTGATGTGCATCCACTGGTTATAGAAAAGTCTGA
GGGTAGTTATGTTTACGACGTCAATGGGAAGAAGTATCTTGATTCTCTTG
CTGGCCTATGGTGCACAGCACTAGGGGGGAGTGAACCTCGCCTTGTGGCT
GCTGCTACTGCACAATTGAATACCCTGCCATTTTACCACTCCTTCTGGAA
TCGTACCACAAAACCTTCTCTGGATCTTGCAAAGGAGCTTTTAGAAATGT
TTACCGCAAGTAAAATGGCCAAGGTTTTCTTTACTAATAGTGGATCAGAA
GCCAATGACACTCAGGTCAAGCTGGTTTGGTATTACAATAATGCTCTTGG
AAGACCAAACAAAAAGAAATTTATCGCACGACAAAAATCGTACCATGGTT
CAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCCAGCTTTGCACCAAAAA
TTTGATCTGCCGGCTCCCTTCGTATTGCACACTGACTGCCCTCATTATTG
GCGCTACGCTCATCCAGGTGAGACAGAGGAGGAGTATTCAACCAGATTAG
CCACAATTTAGAGGATCTCATTCTCAAAGAGGGACCAGAGACGATTGCTG
CATTTATTGCTGAGCCTGT
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