CF504052

Overview
NameCF504052
Unique NameCF504052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_MYCLE (Acetylornithine aminotransferase OS=Mycobacterium leprae GN=argD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 468
            P+V+    G+ V DV+   YLD L G+    LG   P ++ A T Q+ TL    + +   T+PS+ LA+EL+ +  A    +VFF NSG+EAN+   KL    +   GR    K +A Q ++HG T+ + +L+G PA    F+ P P
Sbjct:   27 PIVLASGNGAVVTDVDSNTYLDLLGGIAVNVLGHRHPAVIEAVTHQITTLGHTSNLY--ATEPSITLAEELVALLGADTQTRVFFCNSGTEANELAFKL----SRLTGR---TKLVAAQAAFHGRTMGSLALTGQPAKQAAFE-PLP 163          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_SALTI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Salmonella typhi GN=argD PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 1
Query:   43 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            K +GS V+D  GK+Y+D   G+  TALG   P LV A  +Q  TL  +H+    T +P+L L ++L++   A+   +V F NSG+EAN+T  KL  +Y      P K K IA Q ++HG +L   S+ G P     F      ++H
Sbjct:   30 KGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--WHTSNVFTNEPALCLGRKLID---ATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFQNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIH 170          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALTY (Succinylornithine transaminase OS=Salmonella typhimurium GN=astC PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 53/151 (35.10%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q N   F+H     T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHIGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_XANAC (Acetylornithine aminotransferase OS=Xanthomonas axonopodis pv. citri GN=argD PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 56/150 (37.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:   31 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRP-NKKKFIARQKSYHGSTLIAASLSGLPALHQKFD-LPAPF 471
            +V+E+ +GS V+D  G++YLD  +G+  + LG ++P LVAA T Q   L  +H+     + P L LA+EL+   +AS+ A KVF  NSG+EAN+  +KLV  + ++ GRP +K+  +  + S+HG TL + + +  P   + ++ LP  F
Sbjct:   24 VVLERGQGSRVWDDAGREYLDLSSGIAVSGLGHNDPDLVAALTEQAGKL--WHTSNVFFSAPPLKLAEELV---SASRFAHKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLASVTATAQPKYQEGYEPLPGGF 168          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SALCH (Succinylornithine transaminase OS=Salmonella choleraesuis GN=astC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 52/151 (34.44%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS +++  GK+Y+D   G+   ALG + P L  A   Q N   F+H+    T +P+L LAK+L++   A+   +VFF NSG+EAN+  +KL   Y +     +K   +A + ++HG TL   S  G P   Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWEQQGKEYIDFAGGIAVNALGHAHPALREALNEQANR--FWHTGNGYTNEPALRLAKKLID---ATFAERVFFCNSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_NEIMB (Acetylornithine aminotransferase OS=Neisseria meningitidis serogroup B GN=argD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 52/136 (38.24%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP 435
            P++ E++ GS V+D  G++Y+D   G+   ALG   P LV A  AQ++ L  +H     TT+P+ +LA++L+    A K   VFF NSGSEAN+  +KL   Y        K + +A   S+HG TL   S+ G P
Sbjct:   13 PMIPERASGSRVWDTKGREYIDFSGGIAVNALGHCHPALVDALNAQMHKL--WHISNIYTTRPAQELAQKLVANSFADK---VFFCNSGSEANEAALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQP 143          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_NEIMA (Acetylornithine aminotransferase OS=Neisseria meningitidis serogroup A GN=argD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 52/136 (38.24%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP 435
            P++ E++ GS V+D  G++Y+D   G+   ALG   P LV A  AQ++ L  +H     TT+P+ +LA++L+    A K   VFF NSGSEAN+  +KL   Y        K + +A   S+HG TL   S+ G P
Sbjct:   13 PMIPERASGSRVWDTEGREYIDFSGGIAVNALGHCHPALVDALNAQMHKL--WHISNIYTTRPAQELAQKLVANSFADK---VFFCNSGSEANEAALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQP 143          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_SALTY (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Salmonella typhimurium GN=argD PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   43 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            K +GS V+D  GK+Y+D   G+  TALG   P LV A  +Q  TL  +H+    T +P+L L ++L++   A+   +V F NSG+EAN+T  KL  +Y      P K K IA   ++HG +L   S+ G P     F      ++H
Sbjct:   30 KGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--WHTSNVFTNEPALRLGRKLID---ATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIH 170          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_MYCTU (Acetylornithine aminotransferase OS=Mycobacterium tuberculosis GN=argD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 453
            P+ +   +G+ V DV+G+ Y+D L G+    LG   P ++ A T Q++TL    + +   T+P + LA+EL+ +  A +  +VFF NSG+EAN+   KL    +   GR    K +A   ++HG T+ + +L+G PA    F
Sbjct:   27 PIALASGDGAVVTDVDGRTYIDLLGGIAVNVLGHRHPAVIEAVTRQMSTLGHTSNLY--ATEPGIALAEELVALLGADQRTRVFFCNSGAEANEAAFKL----SRLTGR---TKLVAAHDAFHGRTMGSLALTGQPAKQTPF 159          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_MYCBO (Acetylornithine aminotransferase OS=Mycobacterium bovis GN=argD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 453
            P+ +   +G+ V DV+G+ Y+D L G+    LG   P ++ A T Q++TL    + +   T+P + LA+EL+ +  A +  +VFF NSG+EAN+   KL    +   GR    K +A   ++HG T+ + +L+G PA    F
Sbjct:   27 PIALASGDGAVVTDVDGRTYIDLLGGIAVNVLGHRHPAVIEAVTRQMSTLGHTSNLY--ATEPGIALAEELVALLGADQRTRVFFCNSGAEANEAAFKL----SRLTGR---TKLVAAHDAFHGRTMGSLALTGQPAKQTPF 159          
The following BLAST results are available for this feature:
BLAST of CF504052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ARGD_MYCLE6.204e-1736.05Acetylornithine aminotransferase OS=Mycobacterium ... [more]
ARGD_SALTI8.103e-1736.99Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ASTC_SALTY1.382e-1635.10Succinylornithine transaminase OS=Salmonella typhi... [more]
ARGD_XANAC1.382e-1637.33Acetylornithine aminotransferase OS=Xanthomonas ax... [more]
ASTC_SALCH1.805e-1634.44Succinylornithine transaminase OS=Salmonella chole... [more]
ARGD_NEIMB1.805e-1638.24Acetylornithine aminotransferase OS=Neisseria meni... [more]
ARGD_NEIMA1.805e-1638.24Acetylornithine aminotransferase OS=Neisseria meni... [more]
ARGD_SALTY2.358e-1636.30Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_MYCTU2.358e-1633.80Acetylornithine aminotransferase OS=Mycobacterium ... [more]
ARGD_MYCBO2.358e-1633.80Acetylornithine aminotransferase OS=Mycobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504052 ID=CF504052; Name=CF504052; organism=Citrus sinensis; type=EST; length=619bp
GCTGGGTGGCAGAGTACTGATGTGCATCCACTGGTTATAGAAAAGTCTGA
GGGTAGTTATGTTTACGACGTCAATGGGAAGAAGTATCTTGATTCTCTTG
CTGGCCTATGGTGCACAGCACTAGGGGGGAGTGAACCTCGCCTTGTGGCT
GCTGCTACTGCACAATTGAATACCCTGCCATTTTACCACTCCTTCTGGAA
TCGTACCACAAAACCTTCTCTGGATCTTGCAAAGGAGCTTTTAGAAATGT
TTACCGCAAGTAAAATGGCCAAGGTTTTCTTTACTAATAGTGGATCAGAA
GCCAATGACACTCAGGTCAAGCTGGTTTGGTATTACAATAATGCTCTTGG
AAGACCAAACAAAAAGAAATTTATCGCACGACAAAAATCGTACCATGGTT
CAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCCAGCTTTGCACCAAAAA
TTTGATCTGCCGGCTCCCTTCGTATTGCACACTGACTGCCCTCATTATTG
GCGCTACGCTCATCCAGGTGAGACAGAGGAGGAGTATTCAACCAGATTAG
CCACAATTTAGAGGATCTCATTCTCAAAGAGGGACCAGAGACGATTGCTG
CATTTATTGCTGAGCCTGT
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