CF504052

Overview
NameCF504052
Unique NameCF504052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_ECO55 (Succinylornithine transaminase OS=Escherichia coli (strain 55989 / EAEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.021e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_ECO45 (Succinylornithine transaminase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.021e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_ECOSM (Succinylornithine transaminase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.252e-16
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  P P  +H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDF-APLPPDIH 166          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_ECO27 (Succinylornithine transaminase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=astC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.252e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFSGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_STRCL (Acetylornithine aminotransferase OS=Streptomyces clavuligerus GN=argD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.252e-16
Identity = 50/143 (34.97%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   43 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR-PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 468
            + EGS ++D +G  Y D ++GL   ALG + P +V A + Q+ +L    +F+  + +P++ LA+ L+E+F   +  +VFF NSG+EAN+T  K        +GR   + + +A Q  +HG T+ + +L+G PA  + F LP P
Sbjct:   27 RGEGSTLWDADGTAYTDFVSGLAVNALGHAHPAVVGAVSRQIASLGHISNFY--SAEPTITLAERLIELF--GRPGRVFFCNSGAEANETAFK--------IGRLTGRSRIVAAQSGFHGRTMGSLALTGQPAKREPF-LPLP 156          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: OAPT_PSEPU (Omega-amino acid--pyruvate aminotransferase OS=Pseudomonas putida PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKP-SLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPH 495
            P +I  +EGS++ D  G+K  DSL+GLW    G +   +  A   QL+TL +   F  +   P S  LA+++ ++ T   +  VFFT+SGSE   T VK+V  Y    G+  K K I R + YHG  +   SL G+    + F  P   V H   PH
Sbjct:   33 PRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGF--QYGHPLSFQLAEKITDL-TPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDH--LPH 184          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SHIBS (Succinylornithine transaminase OS=Shigella boydii serotype 4 (strain Sb227) GN=astC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_SHIB3 (Succinylornithine transaminase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=astC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F    P + H
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRH 167          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_ECOSE (Succinylornithine transaminase OS=Escherichia coli (strain SE11) GN=astC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 465
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_ECOLI (Succinylornithine transaminase OS=Escherichia coli (strain K12) GN=astC PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF-DLPA 465
            P +  + EGS ++D  GK+Y+D   G+   ALG + P L  A   Q +   F+H+    T +P L LAK+L++   A +   VFF NSG+EAN+  +KL   + +     +K   +A + ++HG TL   S  G PA  Q F  LPA
Sbjct:   22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDATFADR---VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPA 163          
The following BLAST results are available for this feature:
BLAST of CF504052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ASTC_ECO554.021e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO454.021e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOSM5.252e-1635.10Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECO275.252e-1634.44Succinylornithine transaminase OS=Escherichia coli... [more]
ARGD_STRCL5.252e-1634.97Acetylornithine aminotransferase OS=Streptomyces c... [more]
OAPT_PSEPU6.860e-1635.67Omega-amino acid--pyruvate aminotransferase OS=Pse... [more]
ASTC_SHIBS6.860e-1634.44Succinylornithine transaminase OS=Shigella boydii ... [more]
ASTC_SHIB36.860e-1634.44Succinylornithine transaminase OS=Shigella boydii ... [more]
ASTC_ECOSE6.860e-1636.05Succinylornithine transaminase OS=Escherichia coli... [more]
ASTC_ECOLI6.860e-1636.05Succinylornithine transaminase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504052 ID=CF504052; Name=CF504052; organism=Citrus sinensis; type=EST; length=619bp
GCTGGGTGGCAGAGTACTGATGTGCATCCACTGGTTATAGAAAAGTCTGA
GGGTAGTTATGTTTACGACGTCAATGGGAAGAAGTATCTTGATTCTCTTG
CTGGCCTATGGTGCACAGCACTAGGGGGGAGTGAACCTCGCCTTGTGGCT
GCTGCTACTGCACAATTGAATACCCTGCCATTTTACCACTCCTTCTGGAA
TCGTACCACAAAACCTTCTCTGGATCTTGCAAAGGAGCTTTTAGAAATGT
TTACCGCAAGTAAAATGGCCAAGGTTTTCTTTACTAATAGTGGATCAGAA
GCCAATGACACTCAGGTCAAGCTGGTTTGGTATTACAATAATGCTCTTGG
AAGACCAAACAAAAAGAAATTTATCGCACGACAAAAATCGTACCATGGTT
CAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCCAGCTTTGCACCAAAAA
TTTGATCTGCCGGCTCCCTTCGTATTGCACACTGACTGCCCTCATTATTG
GCGCTACGCTCATCCAGGTGAGACAGAGGAGGAGTATTCAACCAGATTAG
CCACAATTTAGAGGATCTCATTCTCAAAGAGGGACCAGAGACGATTGCTG
CATTTATTGCTGAGCCTGT
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