CF504052

Overview
NameCF504052
Unique NameCF504052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:288..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_YARLI (Acetylornithine aminotransferase, mitochondrial OS=Yarrowia lipolytica GN=ARG8 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query:   31 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL--DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFV 474
            +++ K +G+Y++D N  KY+D  AG+  TALG S P +      Q + L    + +N    P L   L +E L+        KVF  NSG+EAN+  +K        L  P+K +F+  +K++HG T+ A S++  P     F   AP V
Sbjct:   30 VILTKGKGAYLWDSNDNKYIDFSAGIAVTALGHSNPEITKILAEQSSQLMHCSNLFNNEWAPRLQESLVEETLKSGGMKGARKVFLANSGTEANEAALKFARKV-GTLSSPDKTEFVNFEKAFHGRTMGALSVTPNPKYQAPF---APLV 175          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD1_PSESM (Acetylornithine aminotransferase 1 OS=Pseudomonas syringae pv. tomato GN=argD1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 51/137 (37.23%), Postives = 70/137 (51.09%), Query Frame = 1
Query:   43 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 453
            +  GS V+D  G++ +D   G+    LG   P LV A T Q N L  +H     T +P+L LAK+L++   A +   VFF NSG+EAN+   KL     + L  P K + IA   S+HG TL   S+ G P     F
Sbjct:   30 RGAGSRVWDQAGRELVDFSGGIAVNVLGHCHPALVGALTEQANNL--WHVSNVFTNEPTLRLAKKLVDSTFAER---VFFCNSGAEANEAAFKLARRVAHDLYGPEKYEIIAAVNSFHGRTLFTVSVGGQPKYSDGF 161          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_STRCO (Acetylornithine aminotransferase OS=Streptomyces coelicolor GN=argD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.095e-13
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 1
Query:    7 WQSTDVHP-----LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 468
            WQ T ++      L + + EG+ ++D +GK+YLD + G+   ALG + P +V A + Q+ +L    + +    +P + LA+ LL+ F   +  KV+F NSG+EAN+   K+        GRP+    +A +  +HG T+ A +L+G P   + F LP P
Sbjct:   10 WQGTLMNNYGTPRLPLVRGEGARLWDADGKEYLDFVGGIAVNALGHAHPAVVDAVSRQIASLGHVSNLF--IAEPPVALAERLLQHF--GRDGKVYFCNSGAEANEGAFKI----GRLTGRPH---MVATRGGFHGRTMGALALTGQPGKQEPF-LPLP 156          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ASTC_PHOLL (Succinylornithine transaminase OS=Photorhabdus luminescens subsp. laumondii GN=astC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.430e-13
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 1
Query:   43 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 453
            +++GS V+D +GK+Y+D   G+   +LG + P L      Q++ +  +H     T +P L LAK L+E   A K    FF NSG+EAN+  +KL   Y       NK + I+ + S+HG TL   ++ G P   Q +
Sbjct:   27 RAKGSKVWDQDGKEYIDFAGGIAVNSLGHAHPELKDELIYQIDKI--WHIGNGYTNEPVLKLAKRLVENTFADK---AFFCNSGAEANEAALKLARKYAADKYGKNKNEIISFKDSFHGRTLFTVTVGGQPKYSQDY 158          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_VIBPA (Acetylornithine aminotransferase OS=Vibrio parahaemolyticus GN=argD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.430e-13
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 1
Query:   43 KSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 453
            + +GS ++D +  +Y+D   G+  + LG   P +V A T Q N L  +H     T +P+L LAK+L E+  A +   VFF NSG+EAN+  +KL   Y   +  P K + IA ++ +HG T    ++ G  A    F
Sbjct:   29 RGKGSRIWDQDDNEYIDFAGGIAVSCLGHCHPVMVDALTEQGNKL--WHLSNVMTNEPALRLAKKLTEVSFAER---VFFANSGAEANEAALKLARRYAADVHGPEKSEIIAFKQGFHGRTFFTVTVGGQAAYSDGF 160          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_COREF (Acetylornithine aminotransferase OS=Corynebacterium efficiens GN=argD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13
Identity = 47/141 (33.33%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMF-----TASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLP 435
            P+ +   +GS V D +G  Y+D LAG+   ALG + P ++ A T QL+ L    + +   T+P +++A EL++ F     T +   +VFF NSG+EAN+   KL        GR    + +A    +HG T+ + +L+G P
Sbjct:   26 PVELVTGKGSTVTDADGNVYIDLLAGIAVNALGHAHPAIIEAVTTQLSQLGHVSNLF--ATRPVVEVAAELVQRFALDDATIASQTQVFFCNSGAEANEAAFKLA----RLTGR---HRILAATNGFHGRTMGSLALTGQP 157          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_CLOAB (Acetylornithine aminotransferase OS=Clostridium acetobutylicum GN=argD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1
Query:   31 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSF-WNRTTKPSLDLAKELLEMFTA-SKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKF 453
            +  +K EG+ +YD +G +Y+D ++G+    LG   P +V A   Q + L    ++ WN         A EL E+    S+  KVF  NSG+EA +  +KL   Y    G  NKK+ I    S+HG T+ A S++G P   + F
Sbjct:   15 VTFDKGEGTKLYDKDGNEYIDFVSGVAVNCLGHCNPSIVKAIEEQSSKLMHVSNYYWNEN-------AMELTEILCKNSEFDKVFMCNSGTEAIEAGLKLARKYALLHGDENKKEIIYMDNSFHGRTMGALSVTGQPKYQESF 150          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_STRAW (Acetylornithine aminotransferase OS=Streptomyces avermitilis GN=argD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.186e-13
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   31 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGR-PNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 468
            L + +  G+ ++D +GK+YLD + G+   ALG + P +V A + Q+ +L    + +    +P + LA+ LL++F   +  +V+F NSG+EAN+   K        +GR   +   +A Q  +HG T+ A +L+G P   + F LP P
Sbjct:   27 LPLVRGAGTRLWDADGKEYLDFVGGIAVNALGHAHPAIVEAVSTQIASLGHVSNLF--VAEPPVALAERLLQLF--GRDGRVYFCNSGAEANEAAFK--------IGRLTGRSHMVATQGGFHGRTMGALALTGQPGKQEPF-LPLP 160          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_GLOVI (Acetylornithine aminotransferase OS=Gloeobacter violaceus GN=argD PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.186e-13
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 1
Query:   31 LVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSLDLAKELLEMFTASKMA-KVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAPFVLH 480
            +V E+ EG Y+ D  G++YLD +AG+    LG + P L AA   Q  TL    + +    +  L       E  TA   A +VFF NSG+EAN+  +KL   Y   +    + + I   +S+HG T+   + +G P   + F    P  +H
Sbjct:   20 VVFERGEGCYLEDSEGRRYLDFVAGIATCVLGHAHPVLSAAVAEQARTLIHVSNLYYTPQQACL------AEWLTAHSAADQVFFCNSGAEANEGAIKLARKYGRTVLGIAEPQIICAHQSFHGRTMATVTATGQPKYQKHFHPLVPGFVH 164          
BLAST of CF504052 vs. ExPASy Swiss-Prot
Match: ARGD_ANASP (Acetylornithine aminotransferase OS=Anabaena sp. (strain PCC 7120) GN=argD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 49/148 (33.11%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   28 PLVIEKSEGSYVYDVNGKKYLDSLAGLWCTALGGSEPRLVAAATAQLNTLPFYHSFWNRTTKPSL-DLAKELLEMFTASKMAKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARQKSYHGSTLIAASLSGLPALHQKFDLPAP 468
            PL +E+  G  V+D  GK+YLD +AG+    LG + P +V A T Q+  L   H   N    P   +LA+ +++   A    +VFF NSG+EAN+  +KL   Y + +    K   +    S+HG TL   + +G     + FD   P
Sbjct:   41 PLALERGAGCRVWDTQGKEYLDFVAGIATCTLGHAHPAMVEAVTRQIQKL---HHVSNLYYIPEQGELAQWIIQHSCAD---RVFFCNSGAEANEAAIKLARKYAHTVLDIEKPIILTANASFHGRTLATITATGQAKYQKYFDPLVP 182          
The following BLAST results are available for this feature:
BLAST of CF504052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ARGD_YARLI6.420e-1432.67Acetylornithine aminotransferase, mitochondrial OS... [more]
ARGD1_PSESM6.420e-1437.23Acetylornithine aminotransferase 1 OS=Pseudomonas ... [more]
ARGD_STRCO1.095e-1332.70Acetylornithine aminotransferase OS=Streptomyces c... [more]
ASTC_PHOLL1.430e-1334.31Succinylornithine transaminase OS=Photorhabdus lum... [more]
ARGD_VIBPA1.430e-1334.31Acetylornithine aminotransferase OS=Vibrio parahae... [more]
ARGD_COREF2.440e-1333.33Acetylornithine aminotransferase OS=Corynebacteriu... [more]
ARGD_CLOAB2.440e-1333.57Acetylornithine aminotransferase OS=Clostridium ac... [more]
ARGD_STRAW3.186e-1331.97Acetylornithine aminotransferase OS=Streptomyces a... [more]
ARGD_GLOVI3.186e-1331.79Acetylornithine aminotransferase OS=Gloeobacter vi... [more]
ARGD_ANASP4.162e-1333.11Acetylornithine aminotransferase OS=Anabaena sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-540 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504052 ID=CF504052; Name=CF504052; organism=Citrus sinensis; type=EST; length=619bp
GCTGGGTGGCAGAGTACTGATGTGCATCCACTGGTTATAGAAAAGTCTGA
GGGTAGTTATGTTTACGACGTCAATGGGAAGAAGTATCTTGATTCTCTTG
CTGGCCTATGGTGCACAGCACTAGGGGGGAGTGAACCTCGCCTTGTGGCT
GCTGCTACTGCACAATTGAATACCCTGCCATTTTACCACTCCTTCTGGAA
TCGTACCACAAAACCTTCTCTGGATCTTGCAAAGGAGCTTTTAGAAATGT
TTACCGCAAGTAAAATGGCCAAGGTTTTCTTTACTAATAGTGGATCAGAA
GCCAATGACACTCAGGTCAAGCTGGTTTGGTATTACAATAATGCTCTTGG
AAGACCAAACAAAAAGAAATTTATCGCACGACAAAAATCGTACCATGGTT
CAACTTTGATTGCAGCTAGTCTTTCTGGTCTTCCAGCTTTGCACCAAAAA
TTTGATCTGCCGGCTCCCTTCGTATTGCACACTGACTGCCCTCATTATTG
GCGCTACGCTCATCCAGGTGAGACAGAGGAGGAGTATTCAACCAGATTAG
CCACAATTTAGAGGATCTCATTCTCAAAGAGGGACCAGAGACGATTGCTG
CATTTATTGCTGAGCCTGT
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