CF504058

Overview
NameCF504058
Unique NameCF504058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504058 vs. ExPASy Swiss-Prot
Match: ILVH_LACLA (Acetolactate synthase small subunit OS=Lactococcus lactis subsp. lactis GN=ilvH PE=3 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 8.626e-11
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:  250 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSRITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAERE 480
            ++N  G++N  T V++RR  NI S+  G  E + L+  T V+     + + ++++ L++LID+ EV DIT LP  ERE
Sbjct:    9 LHNVTGIMNRFTAVLNRRQVNILSITAGVTESQDLTHTTFVIEVDHLDEVEQIIKQLNRLIDVIEVADITDLPHVERE 86

HSP 2 Score: 30.0314 bits (66), Expect = 8.626e-11
Identity = 12/34 (35.29%), Postives = 21/34 (61.76%), Query Frame = 3 
Query:  516 RRDVLDIAKIFRARAVDVSDHTITLELTGDLTKL 617
            R ++  + + FR   VDV+   +T++LTGD  K+
Sbjct:   99 RAEIFTMIEPFRVNVVDVNLENVTIQLTGDSAKI 132
The following BLAST results are available for this feature:
BLAST of CF504058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ILVH_LACLA8.626e-1137.18Acetolactate synthase small subunit OS=Lactococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-546 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504058 ID=CF504058; Name=CF504058; organism=Citrus sinensis; type=EST; length=626bp
GCTCCCTTTTGGAACTTTTCAGCAGCCTCTTATCCAGATCTTGAAGAGAA
AAAGCGAACTGGTATTTTTATACCAGAAACTAATCAGTCTCTAAATGGAA
ATGCAAATGTCGATACATCCTCAAGGGGTGATGTATATCCTGTGGAGCCT
TATGATGACTTTTCAGCAAATCAAGTTCTTGATGCCCATTGGGGTATTCT
CTATGATGAAGATCCAAGTGGCCTCCGGTCACACACTTTATCTATGCTCG
TGAATAACACTCCCGGTGTTCTCAACATTGTTACCGGGGTCATATCACGA
AGAGGTTACAACATTCAGAGTCTTGCTGTGGGGCCTGCTGAAAAGGAGGG
TCTTTCTCGCATCACAACTGTTGTTCCTGGAACTGATGAGTCAATTGGCA
AGTTGGTTCAGCTATTGCACAAGCTAATAGATCTCCACGAGGTTCAAGAT
ATAACTCACTTGCCATTTGCCGAGCGAGAGCTGATATTAATAAAAATTGC
TGTAATACTGCTGCTAGGAGGGATGTCCTTGACATTGCCAAAATATTCCG
GGCCAGAGCAGTTGACGTGTCTGATCATACAATTACTCTTGAGCTTACAG
GCGATTTAACAAAATTATTGCATTGC
back to top