CF504061
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 115 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 318 TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A +DG++ N Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 115 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 318 TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A +DG++ N Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 115 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 318 TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A +DG++ N Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 115 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 318 TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A +DG++ N Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 115 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 318 TK+FVGGL + T DSSL++ F FGDI EA VIT+R++GKSRG+GFVT +A A +DG++ N Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 82
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 118 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 345 KLF+GGL+ TD+ +L+ F +G I E ++ +RE+ KSRGF FVT++S +A +A M+G+ L+G+ I+V+ A Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12 Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 115 TKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSA----QSAMDGQELN 318 TK+FVGGL + T D+SL++ F FGDI EA VIT+R++GKSRG+GFVT +A A +DG++ N Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKAN 82
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12 Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 1 Query: 118 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFA 345 KLF+GGL+ TD+ +L+ F +G I E ++ +RE+ KSRGF FVT++S A +A M+G+ L+G+ I+V+ A Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12 Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1 Query: 25 CGKL---GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 354 C K+ G +R Q P+ S NA SQ LFV GLS T + +LKE+F A+++T+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A + Sbjct: 546 CNKMEIEGRTIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 651
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12 Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1 Query: 25 CGKL---GMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 354 C K+ G +R Q P+ S NA SQ LFV GLS T + +LKE+F A+++T+RE+G S+GFGFV ++S E A +A+ AM+ E++G + + +A + Sbjct: 543 CNKMEIEGRTIRLELQGPRGSP-NA---RSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648 The following BLAST results are available for this feature:
BLAST of CF504061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504061 ID=CF504061; Name=CF504061; organism=Citrus sinensis; type=EST; length=493bpback to top |