CF504065

Overview
NameCF504065
Unique NameCF504065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig516 contig Csv1_Contig516:1..366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504065 vs. ExPASy Swiss-Prot
Match: GLO2_CYAP8 (Hydroxyacylglutathione hydrolase OS=Cyanothece sp. (strain PCC 8801) GN=gloB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.031e-12
Identity = 37/116 (31.90%), Postives = 59/116 (50.86%), Query Frame = 3
Query:   24 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLD--NVKGCTHQVENGDKFSIGAHVNVLALHTPCHTK 365
            M+I  +P L DNY +L+ +  T+ AAVVDP EP  ++E   +              +DH G N ++++  P + +YGGS D   + G    ++ GD+   G  V  + L  P HT+
Sbjct:    1 MEIKRLPALSDNYIFLLYDADTQTAAVVDPAEPTPVLECLNKLGAQLVAIFNTHHHYDHVGANNQLQQYFPNLCIYGGSEDRGRIPGQQVFLKEGDRVEFGQRVGEV-LFVPGHTR 115          
BLAST of CF504065 vs. ExPASy Swiss-Prot
Match: PNKD_MOUSE (Probable hydrolase PNKD OS=Mus musculus GN=Pnkd PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.170e-12
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = 3
Query:   24 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLALHTPCHTK 365
            +K+  IP L DNY+YLII+     A  VDP +P  +  + ++              WDH+GGN  +       +VYG   D +   TH + + D  S+G  + + AL TP HT+
Sbjct:  119 VKVLPIPVLSDNYSYLIIDTQAGLAVAVDPSDPRAVQASIEKERVNLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVG-RLQIRALATPGHTQ 231          
BLAST of CF504065 vs. ExPASy Swiss-Prot
Match: GLO2M_ARATH (Hydroxyacylglutathione hydrolase 1, mitochondrial OS=Arabidopsis thaliana GN=GLX2-1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 3
Query:   24 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSL--DNVKGCTHQVENGDKFSIGAHVNVLALHTPCHTK 365
            +KI  +PC +DNYAYL+ +E T    VVDP E   +IEA  +               DH GGN ++KE   G KV G ++  D + G    +++ DK+    H  V  L TP HT+
Sbjct:   78 LKIELVPCSKDNYAYLLHDEDTGTVGVVDPSEAAPVIEALSRKNWNLTYILNTHHHDDHIGGNAELKERY-GAKVIGSAVDKDRIPGIDILLKDSDKWMFAGH-EVRILDTPGHTQ 191          
BLAST of CF504065 vs. ExPASy Swiss-Prot
Match: GLO2_GLOVI (Hydroxyacylglutathione hydrolase OS=Gloeobacter violaceus GN=gloB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 36/115 (31.30%), Postives = 55/115 (47.83%), Query Frame = 3
Query:   24 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLD--NVKGCTHQVENGDKFSIGAHVNVLALHTPCHT 362
            M +  +  L+DNY +++ +E  + AAVVDP E   ++EA  +               DH GGN ++ E  PGI VY    D   + G T ++E+GD  + G       +  P HT
Sbjct:    1 MLVHRLNALKDNYVFVLEDEAARTAAVVDPAEARPVLEALVRLGLKLVAIFNTHHHHDHVGGNRELLEAYPGIAVYASRRDRGRIPGQTVELEDGDTVAFGCE-RARVIFVPGHT 114          
BLAST of CF504065 vs. ExPASy Swiss-Prot
Match: GLO2_CYAP7 (Hydroxyacylglutathione hydrolase OS=Cyanothece sp. (strain PCC 7424) GN=gloB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 39/117 (33.33%), Postives = 53/117 (45.30%), Query Frame = 3
Query:   24 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLD--NVKGCTHQVENGDKFSIG---AHVNVLALHTPCH 359
            MKIF +P L DNY +L+ +     AAVVDP EPE ++   K+               DH G N  + E  P + VYGG  D   + G    ++ GD+   G     V  +  HT  H
Sbjct:    1 MKIFRLPALSDNYIFLLHDPQRNIAAVVDPAEPEPVLTCLKKLGAELVTIFNTHHHGDHVGANRALIEHFPNLTVYGGEEDRGRIPGQEVFLKEGDRVQFGDRSGEVFFVPGHTRAH 117          
The following BLAST results are available for this feature:
BLAST of CF504065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GLO2_CYAP83.031e-1231.90Hydroxyacylglutathione hydrolase OS=Cyanothece sp.... [more]
PNKD_MOUSE5.170e-1232.46Probable hydrolase PNKD OS=Mus musculus GN=Pnkd PE... [more]
GLO2M_ARATH1.965e-1136.21Hydroxyacylglutathione hydrolase 1, mitochondrial ... [more]
GLO2_GLOVI9.750e-1131.30Hydroxyacylglutathione hydrolase OS=Gloeobacter vi... [more]
GLO2_CYAP79.750e-1133.33Hydroxyacylglutathione hydrolase OS=Cyanothece sp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-553 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504065 ID=CF504065; Name=CF504065; organism=Citrus sinensis; type=EST; length=366bp
GTGCACTTGAGCAGAGAATAAAAATGAAAATCTTTCATATTCCTTGTTTG
GAAGACAACTATGCCTACCTGATCATTGAAGAGACCACTAAAGAAGCTGC
AGTTGTTGATCCAGTGGAGCCAGAGAAGATCATTGAGGCTGCCAAACAAC
ACGGTGTCAATCTCACCACCGTTCTCACTACTCATCATCACTGGGACCAT
GCTGGAGGGAACGAAAAGATAAAGGAGATGGTGCCTGGGATTAAGGTGTA
TGGGGGCTCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAAAATG
GTGATAAGTTCTCAATTGGGGCTCATGTCAATGTACTGGCTCTTCACACG
CCTTGCCATACCAAAG
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