CF504073 | Citrus Genome Database

Overview


Name	CF504073
Unique Name	CF504073
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	362

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 4.255e-36
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TP
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETP 96

HSP 2 Score: 25.0238 bits (53), Expect = 4.255e-36
Identity = 8/15 (53.33%), Postives = 13/15 (86.67%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLR+  T++A+H+
Sbjct:   96 PRGLRTFKTIFAEHI 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-35
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRK+E PRHGSL +LPRKRAARHRGKVK+FPKDD  KP  LTA +GYKAGMT IVRD+++PG+K HKKE  EAVTII+T          Y++TP
Sbjct:    1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 1.597e-35
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.016e-34
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRK+E PRHG LGFLPRKRAA  RG+VK+FPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TP
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 1.016e-34
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.723e-34
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRK+E PRHG LGFLPRKRAA  RG+VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAV++++T          Y++TP
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 1.723e-34
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 132.494 bits (332), Expect = 2.244e-34
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRK+E PRHG LGFLPRKRAA  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TP
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 2.244e-34
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.954e-34
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHGS+ F P+KR+ARHRGKVKAFPKDD SKP  LT F+GYKAGMTHIVR+ ++PGSK++KKE  EAVT++ET          Y++TP
Sbjct:    1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETP 96

HSP 2 Score: 26.5646 bits (57), Expect = 4.954e-34
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            P GLR+L  VWAQHL
Sbjct:   96 PFGLRALVNVWAQHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.957e-34
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKT 316
            MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE           YV+T
Sbjct:    1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVET 95

HSP 2 Score: 25.409 bits (54), Expect = 4.957e-34
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  321 RGLRSLNTVWAQHL 362
            +GL++  TVWAQHL
Sbjct:   97 QGLKTYKTVWAQHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.959e-34
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRK+E PRHG LGFLPRKRAA  RG+VK+FPKDD +KP  LT+FLGYKAGM+ IVRD+++PGSK HK+E  EAVT+++T          YV+TP
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 4.959e-34
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.959e-34
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRK+E PRHGSLGFLPRKR+A  RG+VK+FPKD  SKP  LTAFLGYKAGMT +VRD+++PGSK+HK+E  EA T+++T          YV+TP
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETP 96

HSP 2 Score: 32.7278 bits (73), Expect = 4.959e-34
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRSL TVWA+HL
Sbjct:   96 PRGLRSLTTVWAEHL 110

[Close]

BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 6.455e-34
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 2

Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LTAF+ +KAGMTHIVR+V+KPGSK++KKE  EAVTI E           Y+ TP
Sbjct:    1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTP 96

HSP 2 Score: 26.9498 bits (58), Expect = 6.455e-34
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  318 PRGLRSLNTVWAQHL 362
            PRG R   TVWA+HL
Sbjct:   96 PRGPRQFKTVWAEHL 110

The following BLAST results are available for this feature:

BLAST of CF504073 vs. ExPASy Swiss-Prot

BLAST of CF504073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26


Match Name	E-value	Identity	Description
RL3_BOVIN	4.255e-36	71.88	60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=...	[more]
RL3_NEUCR	1.597e-35	66.67	60S ribosomal protein L3 OS=Neurospora crassa GN=r...	[more]
RL3_CANGA	1.016e-34	65.63	60S ribosomal protein L3 OS=Candida glabrata GN=RP...	[more]
RL3_ASHGO	1.723e-34	64.58	60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL...	[more]
RL3_YEAST	2.244e-34	65.63	60S ribosomal protein L3 OS=Saccharomyces cerevisi...	[more]
RL3_DROME	4.954e-34	64.58	60S ribosomal protein L3 OS=Drosophila melanogaste...	[more]
RL3_DICDI	4.957e-34	69.47	60S ribosomal protein L3 OS=Dictyostelium discoide...	[more]
RL3_KLULA	4.959e-34	63.54	60S ribosomal protein L3 OS=Kluyveromyces lactis G...	[more]
RL3_DEBHA	4.959e-34	63.54	60S ribosomal protein L3 OS=Debaryomyces hansenii ...	[more]
RL3_TOXCA	6.455e-34	65.63	60S ribosomal protein L3 OS=Toxocara canis GN=RPL3...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-561 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_B02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504073 ID=CF504073; Name=CF504073; organism=Citrus sinensis; type=EST; length=362bp
GTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTCACAGGAAGTTTG
AGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGGAAGAGAGCTGCT
CGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGACCCAAGCAAGCC
TTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGATGACCCACATTG
TTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGGAGACCTGT
GAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGTGGTTGGAGTTGT
GGGATATGTGAAGACACCCTCGTGGTCTTCGCTCTTTGAACACTGTATGG
GCTCAGCATCTT