CF504073

Overview
NameCF504073
Unique NameCF504073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.409e-34
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 2
Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAVTI+ET          YV TP
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTP 96          

HSP 2 Score: 26.9498 bits (58), Expect = 8.409e-34
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  318 PRGLRSLNTVWAQHL 362
            P+G R+L T+WA+HL
Sbjct:   96 PQGPRALTTIWAEHL 110          
BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.419e-33
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 2
Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAV+IIET          Y+ TP
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTP 96          

HSP 2 Score: 26.9498 bits (58), Expect = 2.419e-33
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  318 PRGLRSLNTVWAQHL 362
            P+G R+L T+WA+HL
Sbjct:   96 PQGPRALTTIWAEHL 110          
BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 5.758e-32
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 2
Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ET          YV TP
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATP 96          

HSP 2 Score: 26.9498 bits (58), Expect = 5.758e-32
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRS  T++A+HL
Sbjct:   96 PRGLRSFKTIFAEHL 110          
BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 5.758e-32
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 2
Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP 319
            MSHRKF  PRHG LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ET          YV TP
Sbjct:    1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATP 96          

HSP 2 Score: 26.9498 bits (58), Expect = 5.758e-32
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  318 PRGLRSLNTVWAQHL 362
            PRGLRS  T++A+HL
Sbjct:   96 PRGLRSFKTIFAEHL 110          
BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 2
Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVR-DVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKT 316
            MS RKF  PRHGSL F PRKR+   R    AFP DD S+P  LT F+ YKAGMTH+VR   +   +K   +E  +AVT++E           Y KT
Sbjct:    1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKT 96          
BLAST of CF504073 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.107e-13
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   32 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIET 274
            M  RK   PR GSLGF PRKRA+R   +VK +P+ D  KP  L AFLGY+AGMTH+    ++PG     KE    VTI+ET
Sbjct:    1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVET 80          
The following BLAST results are available for this feature:
BLAST of CF504073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL3_CAEEL8.409e-3466.6760S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR2.419e-3365.6360S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3L_HUMAN5.758e-3263.5460S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3L_BOVIN5.758e-3263.5460S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_ENCCU1.010e-1546.8860S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_AERPE2.107e-1351.8550S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-561 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504073 ID=CF504073; Name=CF504073; organism=Citrus sinensis; type=EST; length=362bp
GTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTCACAGGAAGTTTG
AGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGGAAGAGAGCTGCT
CGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGACCCAAGCAAGCC
TTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGATGACCCACATTG
TTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGGAGACCTGT
GAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGTGGTTGGAGTTGT
GGGATATGTGAAGACACCCTCGTGGTCTTCGCTCTTTGAACACTGTATGG
GCTCAGCATCTT
back to top