CF504085

Overview
NameCF504085
Unique NameCF504085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.584e-31
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 3
Query:  147 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYP 440
            +G I+ R++FE LL +RND  C ARGFYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYC+ ++ +  SDY  P
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQP 186          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.121e-30
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYP 440
            G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+     DY  P
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTP 164          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.912e-30
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 3
Query:  132 TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYP 440
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYC++ + +    Y  P
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSP 177          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.498e-30
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDY 431
            G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYCY+R+  +   Y
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSY 179          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.498e-30
Identity = 66/115 (57.39%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  120 TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSDY--WYPYCPC 452
            +G G D G L  +I+RE F+ +L +RND  C ARGFYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYCY R++ + +DY  W P  PC
Sbjct:   63 SGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNREL-NPADYCQWDPNYPC 175          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.262e-30
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 3
Query:  144 ELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQ 410
            +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+
Sbjct:   75 DLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE 163          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.262e-30
Identity = 63/122 (51.64%), Postives = 77/122 (63.11%), Query Frame = 3
Query:   93 PALCAVNRDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCP 455
            P  C      G G  G +LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYC++R+     DY  P    P
Sbjct:   51 PGNCQSQCPGGPGPSG-DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWP 171          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.260e-30
Identity = 66/138 (47.83%), Postives = 83/138 (60.14%), Query Frame = 3
Query:   45 SSFIFCTRRFSTELWKPALCAVNRDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCP 455
            S F +C    + E   P  C      G G  G +LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYC++R+     DY  P    P
Sbjct:   41 SKFGWCGN--TNEYCGPGNCQSQCPGGPGPSG-DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWP 175          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.260e-30
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 3
Query:  144 ELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQ 410
            +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+
Sbjct:   74 DLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE 162          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.564e-30
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCP 455
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    SDY  P    P
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWP 127          
The following BLAST results are available for this feature:
BLAST of CF504085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI2_ORYSJ8.584e-3159.18Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_SOLTU1.121e-3057.14Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIX_PEA1.912e-3052.43Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI3_TOBAC2.498e-3055.45Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI1_THECC2.498e-3057.39Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU3.262e-3062.92Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI3_SOLTU3.262e-3051.64Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC4.260e-3047.83Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI5_PHAVU4.260e-3062.92Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_HORVU5.564e-3053.2126 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-573 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504085 ID=CF504085; Name=CF504085; organism=Citrus sinensis; type=EST; length=464bp
CTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGT
TTTATCTTTTGTACAAGGAGGTTCAGCACAGAATTGTGGAAGCCGGCGCT
GTGTGCGGTGAACCGTGATACTGGCCACGGGACGGATGGCGGTGAACTGG
GCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAAT
GATGAACGATGCCATGCCAGAGGCTTCTACACTTATGATGCTTTTATAGA
GGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGC
GTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACT
GGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTA
TATTAGGCAAGTTAGCCATGGGTCCGACTACTGGTATCCTTACTGTCCAT
GTCCCTTGCCAGGG
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