CF504085

Overview
NameCF504085
Unique NameCF504085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1867 contig Csv1_Contig1867:39..500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 3
Query:  123 GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCP 455
            G G  GG +  ++S+E+FE LL +RND  C ARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++   + Y  P    P
Sbjct:   78 GGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWP 188          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.114e-29
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  138 GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCP 455
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+Y  P    P
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWP 182          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.761e-29
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  138 GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQ 410
            GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYC++R+
Sbjct:   65 GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE 155          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.606e-29
Identity = 57/109 (52.29%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCP 455
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++    +DY  P    P
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWP 127          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.049e-28
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  123 GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYI 404
            G G   G L  II   MF+D+L YRND +C A GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC++
Sbjct:   77 GGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM 170          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.370e-28
Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  120 TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSDYWY--PYCPC 452
            +G     G L  +ISRE F  +L +RND  C ARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYCY R+++  S Y    P  PC
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPC 156          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.370e-28
Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  120 TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSDYWY--PYCPC 452
            +G     G L  +ISRE F  +L +RND  C ARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYCY R+++  S Y    P  PC
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPC 178          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 1.790e-28
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  138 GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCP 455
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+Y  P    P
Sbjct:   74 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWP 179          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.802e-28
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSH--GSDY 431
            G  G  +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +   GSDY
Sbjct:   73 GGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDY 175          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.160e-27
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  147 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDY 431
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R+     DY
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDY 99          
The following BLAST results are available for this feature:
BLAST of CF504085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI9_ORYSJ9.491e-3051.35Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE2.114e-2953.77Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_PEA2.761e-2959.34Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIC_SECCE3.606e-2952.29Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIB_POPTR1.049e-2860.64Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI2_GOSHI1.370e-2856.52Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.370e-2856.52Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_HORVU1.790e-2852.8326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI1_ORYSJ6.802e-2853.40Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC1.160e-2755.79Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-573 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504085 ID=CF504085; Name=CF504085; organism=Citrus sinensis; type=EST; length=464bp
CTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGT
TTTATCTTTTGTACAAGGAGGTTCAGCACAGAATTGTGGAAGCCGGCGCT
GTGTGCGGTGAACCGTGATACTGGCCACGGGACGGATGGCGGTGAACTGG
GCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAAT
GATGAACGATGCCATGCCAGAGGCTTCTACACTTATGATGCTTTTATAGA
GGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGC
GTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACT
GGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTA
TATTAGGCAAGTTAGCCATGGGTCCGACTACTGGTATCCTTACTGTCCAT
GTCCCTTGCCAGGG
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