CF504085

Overview
NameCF504085
Unique NameCF504085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1867 contig Csv1_Contig1867:39..500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 7.520e-27
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  138 GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWY----PYCPC 452
            G  +  IIS  +F+ +L +RND+ C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYC+ ++ ++G+   Y    P  PC
Sbjct:   73 GSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCF-KEENNGNAPTYCEPKPEWPC 180          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.520e-27
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  147 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCPL 458
            +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++     +Y   P  L
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPPYYGRGPIQL 129          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.874e-26
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYW 434
            GT     G I++RE+FE +L +RN++ C A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYC++RQ+     Y+
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSDRYY 118          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.366e-26
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCPLPG 464
            G+   ++G I++ ++F ++L  RND+RC A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYC++R+ +     +Y   P  L G
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSGFYGRGPIQLTG 123          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.314e-26
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYW 434
            GT     G I++RE+FE +L +RN++ C A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYC+++Q+     Y+
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSDRYY 118          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.418e-25
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCPLPG 464
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYC++R+ +   + +Y   P  L G
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNGYYGRGPIQLTG 130          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.418e-25
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  129 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCY 401
            G+ G  +  I+SR +F+ +L +RND  C A  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYC+
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCF 166          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.958e-24
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  147 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCPL 458
            +G I++ ++F ++L  RND RC A GFYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYC++RQ +  SD +Y   P  L
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-NDQSDRYYGRGPIQL 127          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.734e-23
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  147 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYCPCPL 458
            +G I++ ++F ++L  RND RC A GFYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYC++RQ +  SD +Y   P  L
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ-NDQSDRYYGRGPIQL 127          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.957e-23
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  123 GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDY 431
            G+      +  I+S +++  L  +++D  C ARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++  S Y
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSY 143          
The following BLAST results are available for this feature:
BLAST of CF504085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI3_ORYSJ7.520e-2750.46Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ7.520e-2751.92Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI4.874e-2650.98Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIB_SOLLC6.366e-2649.11Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLLC8.314e-2650.00Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY1.418e-2550.00Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI12_ORYSJ1.418e-2555.43Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC5.958e-2451.92Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC1.734e-2350.96Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI10_ORYSJ2.957e-2345.63Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-573 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504085 ID=CF504085; Name=CF504085; organism=Citrus sinensis; type=EST; length=464bp
CTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGT
TTTATCTTTTGTACAAGGAGGTTCAGCACAGAATTGTGGAAGCCGGCGCT
GTGTGCGGTGAACCGTGATACTGGCCACGGGACGGATGGCGGTGAACTGG
GCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAAT
GATGAACGATGCCATGCCAGAGGCTTCTACACTTATGATGCTTTTATAGA
GGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGC
GTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACT
GGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTA
TATTAGGCAAGTTAGCCATGGGTCCGACTACTGGTATCCTTACTGTCCAT
GTCCCTTGCCAGGG
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