CF504085

Overview
NameCF504085
Unique NameCF504085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.119e-21
Identity = 56/130 (43.08%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  102 CAVNRDTGH---------GTDGGELG--KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYC--PC 452
            C V+RD G             GG  G   +++ + FE +LP+R+D  C ARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY       SD+  P    PC
Sbjct:   71 CRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPC 193          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.119e-21
Identity = 56/130 (43.08%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  102 CAVNRDTGH---------GTDGGELG--KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYPYC--PC 452
            C V+RD G             GG  G   +++ + FE +LP+R+D  C ARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY       SD+  P    PC
Sbjct:   71 CRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPC 193          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.768e-21
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  147 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHG-SDYWYPYCPCPLPG 464
            +G +I++ +F  +LP R++ +C ARGFYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG       ++ WGYC+  +++   S  +Y   P  L G
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSPPYYGRGPIQLTG 138          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.060e-20
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  162 SREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYWYP 440
            +  MFE +LP RN++ C  +GFYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++  SDY  P
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDP 160          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.163e-19
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  147 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWG 392
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y  G
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG 74          
BLAST of CF504085 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 3
Query:   60 CTRRFSTELWKPALCAVNRDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYI 404
            C  R S+ +  P +      +G+ T       +++  +F+ +  +R D  C ++GFY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C+I
Sbjct:  105 CQYRCSSSVRGPRVAL----SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHI 212          
The following BLAST results are available for this feature:
BLAST of CF504085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI7_ORYSJ2.119e-2143.08Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.119e-2143.08Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_ORYSJ2.768e-2146.30Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI8_POPTR3.060e-2045.16Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_AVESA1.163e-1956.10Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI8.072e-1333.91Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-573 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504085 ID=CF504085; Name=CF504085; organism=Citrus sinensis; type=EST; length=464bp
CTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGT
TTTATCTTTTGTACAAGGAGGTTCAGCACAGAATTGTGGAAGCCGGCGCT
GTGTGCGGTGAACCGTGATACTGGCCACGGGACGGATGGCGGTGAACTGG
GCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAAT
GATGAACGATGCCATGCCAGAGGCTTCTACACTTATGATGCTTTTATAGA
GGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAATGAAACCATGC
GTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACT
GGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTA
TATTAGGCAAGTTAGCCATGGGTCCGACTACTGGTATCCTTACTGTCCAT
GTCCCTTGCCAGGG
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