CF504092

Overview
NameCF504092
Unique NameCF504092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_SECCE (Beta-amylase (Fragment) OS=Secale cereale GN=BMY1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.758e-22
Identity = 55/92 (59.78%), Postives = 63/92 (68.48%), Query Frame = 1
Query:  193 SHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAA 468
            SHA E+TAGYYN   RD Y PIA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA     + +A ENALPRYD  A+  ILR A
Sbjct:    1 SHAAEVTAGYYNLHDRDDYRPIARMLTRHHASLNFTCAEMRDSEQSSQAMSAPEELVQQVWSAGWREGLNIACENALPRYDPTAYNTILRNA 92          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_PAEPO (Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.765e-14
Identity = 54/138 (39.13%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   25 NGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPEKLVKQVASATQTAHVPLAGENALP 426
            NGG+ S YG+ FLSWY  +L  H   I A+A   FD+  GV+I  KI+G+HW   + +  H  E   GYY+      Y  + Q          FTC+EM D    P  +L  P  LV  V+S      V L GENALP
Sbjct:  269 NGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNPAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSL--PSTLVDTVSSIANAKGVRLNGENALP 398          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_BACFI (Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.372e-13
Identity = 53/137 (38.69%), Postives = 69/137 (50.36%), Query Frame = 1
Query:   25 NGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPEKLVKQVASATQTAHVPLAGENAL 423
            NGG+ S YG+ FLSWY  +L  H   I A+A   FD+  GV+I  KI+G+HW   + +  H+ E   GYY+      Y  + Q          FTC+EM D    P  +L  P  LV  V+S      V L GENAL
Sbjct:  269 NGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNPAMPHSTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSL--PSTLVDTVSSIANAKGVRLNGENAL 397          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_THETU (Thermophilic beta-amylase OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.162e-12
Identity = 49/135 (36.30%), Postives = 62/135 (45.93%), Query Frame = 1
Query:   31 GWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRD-HEQPQDALCAPEKLVKQVASATQTAHVPLAGENAL 423
            G+ + YG  FL+WY  +L +    I + A S FD    V I  KIAG+HW Y S +  HA E  AGYYN      Y  +            FTC+EM D +        AP  LV  VA+      +   GENAL
Sbjct:  267 GYKTTYGNDFLTWYQSVLTNELANIASVAHSCFDPVFNVPIGAKIAGVHWLYNSPTMPHAAEYCAGYYN------YSTLLDQFKASNLAMTFTCLEMDDSNAYVSPYYSAPMTLVHYVANLANNKGIVHNGENAL 395          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_BACCI (Beta-amylase OS=Bacillus circulans PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 53/137 (38.69%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   28 GGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPEKLVKQVASATQTAHVPLAGENALP 426
            GG+   YG+ FLSWY  +L +H   I A+A   FD   GV+I  KI+GIHW   + S  H+ E   GYY+      Y  + Q          FT +EM D    P  +L  P  LV  V+S   +  V L GENALP
Sbjct:  271 GGYNITYGKDFLSWYQSVLENHLGVIGAAAHKNFDPVFGVRIGAKISGIHWQMNNPSMPHSAEHAGGYYD------YNRLIQKFKDTDLDLTFTALEMYDSGTAPNYSL--PSTLVDTVSSIANSKGVRLNGENALP 399          
BLAST of CF504092 vs. ExPASy Swiss-Prot
Match: AMYB_BACCE (Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 48/150 (32.00%), Postives = 74/150 (49.33%), Query Frame = 1
Query:   31 GWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAA 468
            G+ S YG+ +L WY  +L +H + I   A + FD T  V I  KIAG+HW Y + +  H  E  AGY      + Y  +            FTC+EM D    P+ ++  P+ LV+ +A+      + L GENAL   +E  ++++   A
Sbjct:  274 GYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM--PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMA 415          
The following BLAST results are available for this feature:
BLAST of CF504092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMYB_SECCE2.758e-2259.78Beta-amylase (Fragment) OS=Secale cereale GN=BMY1 ... [more]
AMYB_PAEPO2.765e-1439.13Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 ... [more]
AMYB_BACFI1.372e-1338.69Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV... [more]
AMYB_THETU1.162e-1236.30Thermophilic beta-amylase OS=Thermoanaerobacter th... [more]
AMYB_BACCI1.981e-1238.69Beta-amylase OS=Bacillus circulans PE=3 SV=1[more]
AMYB_BACCE9.833e-1232.00Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-580 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504092 ID=CF504092; Name=CF504092; organism=Citrus sinensis; type=EST; length=481bp
GATACACAGTTTTTCCGAAAAGAAAATGGTGGTTGGTGTAGCCCTTATGG
TGAATTTTTCCTAAGCTGGTATTCGCAGATGCTCTTAGATCACGGAGAGA
GAATTCTCGCATCTGCCAAGTCAATTTTCGATGCTACAGGTGTTAAGATC
TCGGTTAAGATTGCAGGAATCCACTGGCACTATGGGTCTAGGTCCCATGC
CCCTGAGCTCACAGCTGGATATTACAATACACGATTCCGTGATGGTTACC
TCCCTATTGCCCAGATGCTAGCACGGCATGGTGCCATATTCAACTTTACT
TGCATAGAGATGCGTGATCATGAACAACCACAAGATGCCCTTTGTGCACC
TGAGAAGCTAGTCAAGCAAGTGGCTTCAGCAACTCAGACAGCACACGTTC
CTCTGGCCGGGGAAAATGCGTTGCCACGTTATGATGAATACGCTCACGAG
CAGATCTTGCGAGCAGCATCACTTGATGTAG
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