CF504095

Overview
NameCF504095
Unique NameCF504095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.442e-30
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            T RKREIAAF AQT HETTGGW  AP G YAWGYC++R+                 PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFK
Sbjct:  122 TARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFK 223          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.883e-30
Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            T RKRE+AAFFAQT HETTGGW  AP G YAWGYCY+R+     S           PGQ YYGRGPIQ+++N NY  CG A+G +LLNNPDL+AT+ V+SFK
Sbjct:  134 TRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFK 235          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.883e-30
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD ++SFK
Sbjct:  116 TARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFK 217          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.883e-30
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGG--WTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++  RKRE+AAF AQT HETTGG  W  AP G Y WGYCY R+++PA               QY+GRGP+QLTWN NY +CG A+GVDLLNNPDLLATDP +SFK
Sbjct:  119 DDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFK 222          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.459e-30
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFK
Sbjct:  118 TARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFK 219          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.478e-30
Identity = 62/102 (60.78%), Postives = 74/102 (72.55%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            T RKREIAAF AQT HETTGGW  AP G YAWGYCY+R Q SP +              +YYGRGPIQ+++N NY + G+A+GVDL+NNPDL+ATD V+SFK
Sbjct:  114 TTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFK 215          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            RK+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +P+S+            G+ YYGRGP+QL+WN NY +CG A+G DLLNNPDL++ DPV++FK
Sbjct:  122 RKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFK 221          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 9.344e-30
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            RK+E+AAFF QT HETTGGW  AP G Y+WGYC+ ++ +PAS             G+ YYGRGP+QL+WN NY  CG A+GVDLLNNPDL+A D V++FK
Sbjct:  137 RKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFK 236          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.344e-30
Identity = 61/102 (59.80%), Postives = 71/102 (69.61%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            T RKREIAAF AQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATD V+SFK
Sbjct:  118 TARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFK 219          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK
Sbjct:  131 RKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFK 230          
The following BLAST results are available for this feature:
BLAST of CF504095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHIC_SOLLC1.442e-3060.78Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_TOBAC1.883e-3060.78Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_SOLTU1.883e-3059.80Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_THECC1.883e-3060.00Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_SOLTU2.459e-3060.78Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_VITVI5.478e-3060.78Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_BRANA7.154e-3057.00Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH9.344e-3058.00Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI3_SOLTU9.344e-3059.80Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIA_SECCE1.492e-2758.00Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-583 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504095 ID=CF504095; Name=CF504095; organism=Citrus sinensis; type=EST; length=313bp
GAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACT
GGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGC
TTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACT
GTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGT
CCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTT
GGGGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTAC
TATCATTCAAGTC
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