CF504095

Overview
NameCF504095
Unique NameCF504095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            RKRE+AAF AQT H T+GG        Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK
Sbjct:  148 RKREVAAFLAQTSHATSGG-------PYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFK 240          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.331e-19
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++T R++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+G +L+NNPDL+ATD  +SFK
Sbjct:   74 DDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFK 160          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.421e-19
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++T R++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK
Sbjct:   74 DDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFK 160          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.692e-19
Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   12 MRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            +RKRE+AAF AQT HETTGGW  AP G Y  G         ++SD             Y+GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK
Sbjct:   43 VRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSD-------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFK 120          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            RKRE+AAF A     T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK
Sbjct:  179 RKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFK 277          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 3
Query:   15 RKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            RKREIAA+FA   HET           +A  YC   Q  P + +            +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK
Sbjct:   96 RKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK-----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFK 183          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 43/101 (42.57%), Postives = 55/101 (54.46%), Query Frame = 3
Query:   18 KREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            KREIAAFFA   HET                CYI +++ AS D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK
Sbjct:  138 KREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFK 225          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = 3
Query:   18 KREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            KREIAAFFA   HET                CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFK 222          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.356e-12
Identity = 44/103 (42.72%), Postives = 53/103 (51.46%), Query Frame = 3
Query:   18 KREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQ----VSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            KREIAAFFA   HETT               C+I +    V  A  D           G+ YYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK
Sbjct:  136 KREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFK 225          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.356e-12
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++ MRKREIAAF  QT HET G W  A G +Y WGYC++                                 N NY  CG+ L + LL  P+L+ TDP ++FK
Sbjct:  132 DDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPELVETDPFIAFK 201          
The following BLAST results are available for this feature:
BLAST of CF504095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHI7_ORYSI1.145e-1949.50Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIQ_TOBAC3.331e-1947.57Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC7.421e-1947.57Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_AVESA9.692e-1948.00Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI1.310e-1543.00Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIT_DIOJA2.091e-1340.40Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ2.731e-1342.57Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ7.947e-1341.58Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU1.356e-1242.72Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_POPTR1.356e-1236.89Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-583 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504095 ID=CF504095; Name=CF504095; organism=Citrus sinensis; type=EST; length=313bp
GAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACT
GGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGC
TTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACT
GTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGT
CCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTT
GGGGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTAC
TATCATTCAAGTC
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