CF504095

Overview
NameCF504095
Unique NameCF504095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length313
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:344..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 3
Query:    9 TMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++ +REIA  FA   HET               +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F+
Sbjct:  116 SVTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFR 206          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.020e-12
Identity = 39/101 (38.61%), Postives = 52/101 (51.49%), Query Frame = 3
Query:   18 KREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            KREIAAFFA   HET               +CYI ++   S    D             YYGRGP+Q++WN NY   G+++G D L +PD +A  PVL+F+
Sbjct:  119 KREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQ 206          
BLAST of CF504095 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.148e-11
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 3
Query:    3 NETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFK 311
            ++   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK
Sbjct:  115 SQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFK 206          
The following BLAST results are available for this feature:
BLAST of CF504095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHI4_BRANA1.770e-1236.54Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI6_ORYSJ3.020e-1238.61Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE1.148e-1136.19Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-583 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504095 ID=CF504095; Name=CF504095; organism=Citrus sinensis; type=EST; length=313bp
GAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACT
GGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGC
TTGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACT
GTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGT
CCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTT
GGGGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTAC
TATCATTCAAGTC
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