CF504100

Overview
NameCF504100
Unique NameCF504100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10716 contig Csv1_Contig10716:286..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP_SARPE (Poly [ADP-ribose] polymerase OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.548e-18
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  220 LNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSK-EDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDY 498
            L ++D+    NS+Y LQ+++ D  +  +VFR WGR+G   IGG++L+ FS   DA+ +FK L+LEK+GN    +E ++NF K  G+ +P+DIDY
Sbjct:  543 LGITDIQKNKNSFYKLQLLESDMKNRFWVFRSWGRIGT-TIGGNKLDNFSNLVDAIVQFKELYLEKSGN---HFENRENFVKVAGRMYPIDIDY 632          

HSP 2 Score: 25.409 bits (54), Expect = 8.548e-18
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3
Query:  117 VTIKVKGQSAVHEASGMQDTGHI-LEDGKSVYN 212
            +T+K+K   AV   SG++D  H+ +   K  YN
Sbjct:  508 MTLKIKDGLAVDPDSGLEDVAHVYVSRNKEKYN 540          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP_DROME (Poly [ADP-ribose] polymerase OS=Drosophila melanogaster GN=Parp PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.878e-17
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  220 LNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEF-SKEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDY 498
            L ++D+    NSYY +Q+++ DK    ++FR WGR+G + IG S+LEEF + E A   FK ++ +KTGN    +EQ+ NF K+ G+ +P++I Y
Sbjct:  540 LGLTDIQRNKNSYYKVQLLKADKKEKYWIFRSWGRIGTN-IGNSKLEEFDTSESAKRNFKEIYADKTGN---EYEQRDNFVKRTGRMYPIEIQY 629          

HSP 2 Score: 26.9498 bits (58), Expect = 1.878e-17
Identity = 12/31 (38.71%), Postives = 17/31 (54.84%), Query Frame = 3
Query:  120 TIKVKGQSAVHEASGMQDTGHILEDGKSVYN 212
            T KVK   AV   SG++D  H+  D  + Y+
Sbjct:  507 TFKVKDGLAVDPDSGLEDIAHVYVDSNNKYS 537          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP3_SOYBN (Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.182e-16
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  223 NMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKED-AVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGV 504
            ++ D   G+N Y ++Q+I   +      F+K GRVG+D     +LEE+   D A+ EF RLF E TGN +E WE+++ FQKKP KF+P+D+D G+
Sbjct:  338 SVCDQGRGLNDYCVMQLIVVPENRLHLYFKK-GRVGDDPNAEERLEEWDNVDGALKEFVRLFEEITGNEFEPWEREKKFQKKPLKFYPIDMDDGI 431          

HSP 2 Score: 29.6462 bits (65), Expect = 1.182e-16
Identity = 22/89 (24.72%), Postives = 41/89 (46.07%), Query Frame = 3
Query:   12 VPIVREDYLVDCFKRQKKLPFDLYKV---------------EAVGE---SSSMVTIKVKGQSAVHEASGMQDT-GHILEDGKSVYNTDF 221
            +P+VRE +L+D  ++Q+  P + Y +               +  GE    S    +K+ G+  V++ + +Q+  G I E    +YN  F
Sbjct:  249 IPVVREAWLIDSIEKQEPQPLEAYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQGGKIFERDGILYNCAF 337          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP3_MEDTR (Putative poly [ADP-ribose] polymerase 3 OS=Medicago truncatula GN=PARP3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.409e-16
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  223 NMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKED-AVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGV 504
            ++ D    +N Y ++Q+I   + S    F+K GRVG+D     +LEE    D A+ EF RLF E TGN +E+WE+++ FQKKP KF+P+D+D GV
Sbjct:  325 SLCDQGRKLNDYCVMQLIVVPENSLHLYFKK-GRVGDDPSAEERLEECENVDNAIKEFVRLFEEITGNEFESWEREKKFQKKPLKFYPIDMDDGV 418          

HSP 2 Score: 26.5646 bits (57), Expect = 7.409e-16
Identity = 21/89 (23.60%), Postives = 39/89 (43.82%), Query Frame = 3
Query:   12 VPIVREDYLVDCFKRQKKLPFDLYKV---------------EAVGE---SSSMVTIKVKGQSAVHEASGM-QDTGHILEDGKSVYNTDF 221
            +P+VRE +L D  ++Q+  P + Y +               +  GE    S    +K+ G+  V++ + + +  G I E    +YN  F
Sbjct:  236 IPVVREAWLTDSIEKQEPQPLESYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLHEQDGKIFEKDGILYNCAF 324          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP3_ARATH (Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.020e-15
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  223 NMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKEDA-VCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGV 504
            ++ DL  G N Y I+Q++     S+  ++ K G+VG+D     +LEE+  E+A + EF RLF E  GN +E WE+++  QKKP KFFP+D+D G+
Sbjct:  339 SICDLGKGRNEYCIMQLVTVPD-SNLNMYFKRGKVGDDPNAEERLEEWEDEEAAIKEFARLFEEIAGNEFEPWEREKKIQKKPHKFFPIDMDDGI 432          

HSP 2 Score: 24.2534 bits (51), Expect = 6.020e-15
Identity = 21/91 (23.08%), Postives = 38/91 (41.76%), Query Frame = 3
Query:   12 VPIVREDYLVDCFKRQKKLPFDLYKV--------------------EAVGESSSMVTIKVKGQSAVHEASGMQDT-GHILEDGKSVYNTDF 221
            +P+V E +L+D  ++ +  P + Y V                    EA+   S    +K+ G+  V+  + +Q+  G I E    +YN  F
Sbjct:  250 LPVVSEAWLIDSVEKHEAQPLEAYDVVSDLSVEGKGIPWDKQDPSEEAI--ESFSAELKMYGKRGVYMDTKLQERGGKIFEKDGLLYNCAF 338          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PME1_CAEEL (Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditis elegans GN=pme-1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.894e-14
Identity = 39/95 (41.05%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  217 TLNMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFS-KEDAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDY 498
            TL+ +DL+   NSYY +Q+++DD+  + YVFR WGRVG + +GG++ E +S   +A+ +F+ +F EKT N    W  +++F+K PG F  ++ DY
Sbjct:  480 TLSFTDLTQNKNSYYKIQLLKDDQRENYYVFRSWGRVGTE-VGGNKHESYSNSNEAILKFQDVFHEKTKND---WIYRKHFRKMPGMFSYVETDY 570          
BLAST of CF504100 vs. ExPASy Swiss-Prot
Match: PARP3_ORYSJ (Poly [ADP-ribose] polymerase 3 OS=Oryza sativa subsp. japonica GN=PARP3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.149e-11
Identity = 36/97 (37.11%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  223 NMSDLSTGVNSYYILQIIQDDKGSDCYVFRKWGRVGNDKIGGSQLEEFSKE--DAVCEFKRLFLEKTGNPWEAWEQKQNFQKKPGKFFPLDIDYGVN 507
            ++ DL   +N   I+Q+I   + +  +++ K G +G+D++   ++E+F     DA+ EF RLF E TGN +E WE+++ F+KK  K +PLD+D GV+
Sbjct:  354 SVCDLGGDINQLCIMQLIMVPE-NHLHLYYKKGPIGHDQMAEERVEDFGSRFNDAIKEFVRLFEEVTGNEFEPWEREKKFKKKCMKMYPLDMDDGVD 449          
The following BLAST results are available for this feature:
BLAST of CF504100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PARP_SARPE8.548e-1843.62Poly [ADP-ribose] polymerase OS=Sarcophaga peregri... [more]
PARP_DROME1.878e-1741.49Poly [ADP-ribose] polymerase OS=Drosophila melanog... [more]
PARP3_SOYBN1.182e-1643.16Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=P... [more]
PARP3_MEDTR7.409e-1644.21Putative poly [ADP-ribose] polymerase 3 OS=Medicag... [more]
PARP3_ARATH6.020e-1542.11Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thal... [more]
PME1_CAEEL1.894e-1441.05Poly(ADP-ribose) polymerase pme-1 OS=Caenorhabditi... [more]
PARP3_ORYSJ1.149e-1137.11Poly [ADP-ribose] polymerase 3 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-588 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504100 ID=CF504100; Name=CF504100; organism=Citrus sinensis; type=EST; length=510bp
GGAAGATGAAAGTACCTATTGTTAGGGAGGATTACCTGGTTGATTGTTTT
AAAAGACAAAAGAAGCTTCCTTTCGATCTGTACAAAGTTGAAGCGGTTGG
TGAGTCTTCTAGCATGGTTACAATCAAAGTTAAAGGGCAAAGTGCTGTTC
ATGAAGCTTCTGGTATGCAAGATACGGGTCACATTCTTGAGGATGGAAAA
AGTGTTTATAACACCGACTTTGAATATGTCTGATTTATCAACTGGTGTTA
ACAGTTACTATATCCTGCAAATCATCCAAGATGATAAAGGGTCAGATTGT
TATGTGTTTCGTAAATGGGGTCGAGTGGGAAATGACAAGATTGGTGGAAG
CCAACTGGAAGAGTTTTCAAAAGAAGATGCAGTTTGTGAATTCAAACGTT
TGTTCCTTGAGAAGACTGGGAACCCATGGGAGGCTTGGGAACAGAAACAA
AATTTCCAGAAGAAACCTGGAAAATTCTTCCCACTGGATATTGATTATGG
AGTTAACAAA
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