CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDL--QLERINVYYNEASCGRYVPRAVLMDLEP 279
            +RE++ I  GQ G QIG+  W++ C EHGI P G+   D  +    +  N +++E   G++VPR V +DLEP
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEP 72
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +RE + I  GQ G Q+G+  W++ C EHGI P G+   D  + +  +  N ++ E   G++VPRAV +DLEP  +
Sbjct:    1 MRECISIHVGQAGVQMGNSCWELYCLEHGIQPDGQMPSDKTVGVCNDSFNTFFTETGSGKHVPRAVFVDLEPSVI 75
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +RE + I  GQ G Q+G+  W++ C EHGI P  K   D  + +  +  N +++E   G++VPRAV +DLEP  +
Sbjct:    1 MRECISIHVGQAGVQMGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVV 75
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDL--QLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +RE + I  GQ G QIG+  W++ C EHGI P G+   D  +    +  N +++E   G++VPRAV +DLEP  +
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPSVV 75
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBA_NEOCA9.957e-1140.28Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA2_HOMAM9.957e-1138.67Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA1_HOMAM9.957e-1138.67Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA1_APLCA9.957e-1140.00Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
back to top