CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig518 contig Csv1_Contig518:1..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.086e-33
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TGKY GD+DLQLERINVYYNEAS GR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.086e-33
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TGKY GD+DLQLERINVYYNEAS GR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDQTGKYAGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 7.086e-33
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TGKY GD++LQLERINVYYNEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSELQLERINVYYNEASGGRYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.255e-33
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TGKY GD+DLQLERINVYYNEAS GR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.255e-33
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TGKY GD+DLQLERINVYYNEAS GR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.255e-33
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDT-DLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILH+QGGQCGNQIGSKFW+V+C EHG+DPTG+Y GD+ DLQLERINVYYNEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRYVPRAVLMDLEPGTM 74          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.579e-32
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDT-DLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIGSKFW+V+C EHGID TG+Y GDT DLQLERINVYYNEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRYVPRAVLMDLEPGTM 74          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.062e-32
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TG+Y GD+DLQLERINVYYNEAS GR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDGTGRYAGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB3_ELEIN (Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.693e-32
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TGKY GD+DLQLERINVYYNEA  GR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQLERINVYYNEAGGGRFVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.517e-32
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGD--TDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILH+QGGQCGNQIGSKFW+V+C EHG+DPTGKY GD  +D+QLERI+VYYNEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGRYVPRAVLMDLEPGTM 75          
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBB5_ORYSJ7.086e-3386.30Tubulin beta-5 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_WHEAT7.086e-3386.30Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB3_SOYBN7.086e-3386.30Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB7_MAIZE9.255e-3386.30Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB1_ELEIN9.255e-3386.30Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB1_ARATH9.255e-3385.14Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB5_ARATH1.579e-3287.84Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB4_WHEAT2.062e-3284.93Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB3_ELEIN2.693e-3284.93Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 P... [more]
TBB6_GOSHI3.517e-3282.67Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
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