CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.835e-32
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.835e-32
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQG---DTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIGSKFW+V+C EHG+DPTG+Y+G   ++DLQLERINVY+NEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTM 76          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.835e-32
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQG---DTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIGSKFW+V+C EHG+DPTG+Y+G   ++DLQLERINVY+NEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTM 76          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.023e-31
Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_TETPY (Tubulin beta chain OS=Tetrahymena pyriformis GN=BETA-TT1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.023e-31
Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.023e-31
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIGSKFW+VVC EHGIDPTG+   ++DLQL+RINVYYNEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQLDRINVYYNEASGGRYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.023e-31
Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.336e-31
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+QGGQCGNQIG+KFW+V+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTM
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.336e-31
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+QGGQCGNQIG+KFW+V+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTM
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.745e-31
Identity = 58/73 (79.45%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +RE++HIQGGQCGNQIG+KFW+V+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTM 73          
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBB_STYLE7.835e-3283.56Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 ... [more]
TBB2_SOLTU7.835e-3281.58Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU7.835e-3281.58Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB_TETTH1.023e-3182.19Tubulin beta chain OS=Tetrahymena thermophila GN=B... [more]
TBB_TETPY1.023e-3182.19Tubulin beta chain OS=Tetrahymena pyriformis GN=BE... [more]
TBB2_DAUCA1.023e-3184.93Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB1_PARTE1.023e-3182.19Tubulin beta chain OS=Paramecium tetraurelia GN=bP... [more]
TBB_EUPCR1.336e-3180.82Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB1_CYAPA1.336e-3180.82Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBB_PHYCI1.745e-3179.45Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
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