CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.745e-31
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TG+  GDTDLQLERINVY+NEAS G+YVPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.280e-31
Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCGNQIG+KFW+VV  EHGIDPTG Y GD+DLQLERINVY+NEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.280e-31
Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCGNQIG+KFW+VV  EHGIDPTG Y GD+DLQLERINVY+NEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.977e-31
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCGNQIG+KFW+VV  EHG+DPTG Y GD+DLQLERINVY+NEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.888e-31
Identity = 58/73 (79.45%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+QGGQCGNQIG+KFW+V+  EHG++PTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTM
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVEPTGAYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.888e-31
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCG+QIG+KFW+V+  EHGIDPTG Y GD+DLQLER+NVYYNEA+ GRYVPRAVLMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGDQIGAKFWEVISDEHGIDPTGTYNGDSDLQLERVNVYYNEATGGRYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.078e-31
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKY--QGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILH+QGGQCGNQIGSKFW+V+C EHGID TGKY  +G +D QLERINVYYNEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGIDQTGKYISEGGSDTQLERINVYYNEASGGRYVPRAVLMDLEPGTM 75          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_THAWE (Tubulin beta chain OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.633e-31
Identity = 58/73 (79.45%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQGGQCGNQIG+KFW+V+  EHG+DPTG Y GD+DLQLERINVY+NEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVMSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.633e-31
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.633e-31
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIGSKFW+V+  EHGIDPTG+Y GD+DLQLERIN Y+NEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGDSDLQLERINCYFNEATAGRYVPRAILMDLEPGTM 73          
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBB9_ARATH1.745e-3183.56Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_CHLRE2.280e-3182.19Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB1_VOLCA2.280e-3182.19Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB_CHLIN2.977e-3180.82Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB_EUPOC3.888e-3179.45Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]
TBB4_OOMCK3.888e-3180.82Tubulin beta-4 chain OS=Oomycete-like sp. (strain ... [more]
TBB_CICAR5.078e-3182.67Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB_THAWE6.633e-3179.45Tubulin beta chain OS=Thalassiosira weissflogii PE... [more]
TBB_NAEGR6.633e-3179.45Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB6_ECTVR6.633e-3178.08Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
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