CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_TRITR (Tubulin beta chain OS=Trichuris trichiura PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.478e-30
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEAS G+YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.478e-30
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEAS G+YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_NOTCO (Tubulin beta-1 chain OS=Notothenia coriiceps neglecta GN=tubb1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.478e-30
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIGSKFW+V+  EHGIDPTG Y GD+DLQL+RINVYYNEAS G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.930e-30
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHGID TG+Y GD+ LQLERI+VY+NEAS G+YVPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.930e-30
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW V+  EHG+DPTG Y+GD+DLQLERINVYYNEA+ GRYVPRAVL+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWQVISDEHGVDPTGTYKGDSDLQLERINVYYNEATGGRYVPRAVLIDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_MANSE (Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.930e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+++  EHGIDPTG Y GD+DLQLERINVYYNEAS G+YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.520e-30
Identity = 57/73 (78.08%), Postives = 68/73 (93.15%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+QGGQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINV+YNEA+ GR+VPRA+LMDLEPGTM
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIDPTGTYCGDSDLQLERINVFYNEATGGRFVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.520e-30
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHG+DPTG Y G +  QLERINVY+NEAS GR+VPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTGTSPQQLERINVYFNEASGGRHVPRAVLMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.520e-30
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIGSKFW+V+  EHGIDPTG Y GD+DLQLERIN Y+NEA+ GRYVPRA+LMDLEPGTM
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTM 73          
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_XENLA (Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73          
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBB_TRITR1.478e-3079.45Tubulin beta chain OS=Trichuris trichiura PE=3 SV=... [more]
TBB2_ECHMU1.478e-3079.45Tubulin beta-2 chain OS=Echinococcus multiloculari... [more]
TBB1_NOTCO1.478e-3079.45Tubulin beta-1 chain OS=Notothenia coriiceps negle... [more]
TBB4_ARATH1.930e-3080.82Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_OOMCK1.930e-3079.45Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB1_MANSE1.930e-3078.08Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1[more]
TBB_TOXGO2.520e-3078.08Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBB8_ORYSJ2.520e-3079.45Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_ECTVR2.520e-3078.08Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]
TBB4_XENLA4.299e-3078.08Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
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