CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEAS G+YVPRA L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEASGGKYVPRACLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2C_RAT (Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2C_MOUSE (Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2C_HUMAN (Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2C_BOVIN (Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQL+RINVYYNEAS G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.299e-30
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIGSKFW+V+  EHGIDPTG+Y GD+DLQLERINVYYNEA   +YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGQYVGDSDLQLERINVYYNEAGSNKYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_PARLI (Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.615e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 5.615e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y G++DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGESDLQLERINVYYNEATGGKYVPRAVLVDLEPGTM 73
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBB4_CAEEL4.299e-3079.45Tubulin beta-4 chain OS=Caenorhabditis elegans GN=... [more]
TBB3_CHICK4.299e-3078.08Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1[more]
TBB2C_RAT4.299e-3078.08Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2C_MOUSE4.299e-3078.08Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE... [more]
TBB2C_HUMAN4.299e-3078.08Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE... [more]
TBB2C_BOVIN4.299e-3078.08Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2... [more]
TBB1_GADMO4.299e-3078.08Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB1_CAEBR4.299e-3079.45Tubulin beta-1 chain OS=Caenorhabditis briggsae GN... [more]
TBB_PARLI5.615e-3078.08Tubulin beta chain OS=Paracentrotus lividus PE=2 S... [more]
TBB1_PHYPO5.615e-3078.08Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
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