CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_ECHMU (Tubulin beta-1 chain OS=Echinococcus multilocularis GN=TUB-1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.615e-30
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIGSKFW+V+  EHG+DPTG Y GD+DLQLERINVYY+EAS G+YVPR VL+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYSEASGGKYVPRCVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.333e-30
Identity = 57/73 (78.08%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+QGGQCGNQIG+KFW+V+  EHGI PTG Y+GD+DLQLERI+V+YNEA+ GRYVPRAVLMDLEPGTM
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGDSDLQLERISVFYNEATGGRYVPRAVLMDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_MOUSE (Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 7.333e-30
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_MACFA (Tubulin beta-4 chain OS=Macaca fascicularis GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.333e-30
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.333e-30
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.333e-30
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+H+Q GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+ G YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.578e-30
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +RE++HIQGGQCGNQIG+KFW+V+  EHG+DPTG Y GD+DLQLERINVYYNEA+ G YVPRA+LMDLEPGTM
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEAT-GTYVPRAILMDLEPGTM 72
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILHIQGGQCGNQIG+KFW+V+C EHG+D TG Y G +  QLERINVYYNEA  GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCYSGVSPQQLERINVYYNEAGGGRYVPRAVLMDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTM 73
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBB1_ECHMU5.615e-3078.08Tubulin beta-1 chain OS=Echinococcus multiloculari... [more]
TBB_EIMTE7.333e-3078.08Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB4_MOUSE7.333e-3078.08Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1... [more]
TBB4_MACFA7.333e-3078.08Tubulin beta-4 chain OS=Macaca fascicularis GN=TUB... [more]
TBB4_HUMAN7.333e-3078.08Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1... [more]
TBB4_BOVIN7.333e-3078.08Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 S... [more]
TBB_ACHKL9.578e-3078.08Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB_PIG1.251e-2976.71Tubulin beta chain OS=Sus scrofa PE=1 SV=1[more]
TBB3_MAIZE1.251e-2979.45Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB2_CHICK1.251e-2976.71Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
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