CF504103

Overview
NameCF504103
Unique NameCF504103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig518 contig Csv1_Contig518:1..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2B_MOUSE (Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2B_HUMAN (Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2B_BOVIN (Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2A_RAT (Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2A_MOUSE (Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2A_MACFA (Tubulin beta-2A chain OS=Macaca fascicularis GN=TUBB2A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB2A_HUMAN (Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+V+  EHGIDPTG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REILH+Q GQCGNQIG KFW+V+C EHGID TG Y G+  LQLER+NVYYNEAS GRYVPRAVLMDLEPGTM
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGNFHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTM 73
[Close]
BLAST of CF504103 vs. ExPASy Swiss-Prot
Match: TBB1_GLOMM (Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.251e-29
Identity = 57/73 (78.08%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   70 VREILHIQGGQCGNQIGSKFWDVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTM 288
            +REI+HIQ GQCGNQIG+KFW+++  EHGID TG Y GD+DLQLERINVYYNEAS G+YVPRAVL+DLEPGTM
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTM 73
The following BLAST results are available for this feature:
BLAST of CF504103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TBB2B_RAT1.251e-2976.71Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2B_MOUSE1.251e-2976.71Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE... [more]
TBB2B_HUMAN1.251e-2976.71Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE... [more]
TBB2B_BOVIN1.251e-2976.71Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1... [more]
TBB2A_RAT1.251e-2976.71Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2A_MOUSE1.251e-2976.71Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE... [more]
TBB2A_MACFA1.251e-2976.71Tubulin beta-2A chain OS=Macaca fascicularis GN=TU... [more]
TBB2A_HUMAN1.251e-2976.71Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE... [more]
TBB1_SOYBN1.251e-2979.45Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB1_GLOMM1.251e-2978.08Tubulin beta-1 chain OS=Glossina morsitans morsita... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-591 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504103 ID=CF504103; Name=CF504103; organism=Citrus sinensis; type=EST; length=288bp
GAAAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCAA
GAAACCCCAAAAGAAGAAAGTGCGTGAAATCCTTCACATTCAAGGGGGCC
AATGCGGGAACCAAATCGGATCCAAGTTCTGGGATGTGGTTTGCGCCGAG
CACGGTATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGCT
TGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTGC
CCAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATG
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