CF504106

Overview
NameCF504106
Unique NameCF504106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_MOUSE (UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.046e-39
Identity = 79/131 (60.31%), Postives = 90/131 (68.70%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VA+GRR  L VFG DY+T+DGTGVRDYIHV+DLA GHIAAL KL + + GC  YNLGTG G SVL+MV A EKASGKKIP     RR GD    YA+   A  EL W A  G+D MC D W W  +NP G+
Sbjct:  214 VAIGRREALNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLKE-QCGCRTYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 343          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_DICDI (UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.975e-39
Identity = 76/133 (57.14%), Postives = 92/133 (69.17%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESS 404
            A+G+RP L++FG DY+T DGTGVRD+IHV+DLA GHI+AL  L   K GC  YNLGTG+G SVLEMV A ++AS K+IP     RR GD    +A   KA +EL WKA +  D+MCRD W W S NP GY  S
Sbjct:  212 AIGKRPILSIFGNDYNTPDGTGVRDFIHVVDLAKGHISALSSLHSKKQGCVAYNLGTGRGYSVLEMVGALKQASHKEIPYQIVSRRKGDVASSFADPSKALKELGWKATHNQDDMCRDAWKWQSLNPNGYSDS 344          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.192e-39
Identity = 77/132 (58.33%), Postives = 95/132 (71.97%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDD-PKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VAVGRRP L+V+G+D+ T DGTGVRDYIH++DLA+GH+ AL KL +  + G   YNLGTG G SVL+MV AFEKASGKK+      RR GD    YA    A+++L WKA+ GID+MC D W W S+NP GY
Sbjct:  216 VAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAEGHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLVDRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGY 347          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_SALTY (UDP-glucose 4-epimerase OS=Salmonella typhimurium GN=galE PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.849e-37
Identity = 75/131 (57.25%), Postives = 92/131 (70.23%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VAVGRR  L VFG DY T+DGTGVRDYIHV+DLADGH+ A+ KL D K G  +YNLG G G+SVL++V AF KA GK I    + RR GD    +A   KA+RELNW+    +DEM +D W+W S++P GY
Sbjct:  207 VAVGRRESLAVFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAD-KSGVHIYNLGAGVGSSVLDVVNAFSKACGKPINYHFAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_SALTI (UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.849e-37
Identity = 75/131 (57.25%), Postives = 92/131 (70.23%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VAVGRR  L VFG DY T+DGTGVRDYIHV+DLADGH+ A+ KL D K G  +YNLG G G+SVL++V AF KA GK I    + RR GD    +A   KA+RELNW+    +DEM +D W+W S++P GY
Sbjct:  207 VAVGRRESLAVFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAD-KSGVHIYNLGAGVGSSVLDVVNAFSKACGKPINYHFAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.150e-36
Identity = 72/131 (54.96%), Postives = 91/131 (69.47%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VAVGRR  L +FG DY T+DGTGVRDYIHV+DLADGH+ A+ KL + K G  +YNLG G G SVL++V AF KA GK +    + RR GD    +A   KA+RELNW+    +DEM +D W+W S++P GY
Sbjct:  207 VAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAN-KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.373e-36
Identity = 72/137 (52.55%), Postives = 99/137 (72.26%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIG--CEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYESSN 407
            VA+GRR +L+VFG+DY++KDGT +RDYIHVIDLA GHIAAL+ L + K    C  +NLGTG G++V E+  AF +A GKK+P    GRR GD   + A+  +A  EL WKA+  I++ C+D WNW +KNP+G++ +N
Sbjct:  211 VAIGRREKLSVFGSDYNSKDGTPIRDYIHVIDLAKGHIAALNYLFNHKDNGLCREWNLGTGNGSTVFEVFNAFCEAVGKKLPFEVVGRRDGDVLNLTANPKRANTELKWKAQLSINDACKDLWNWTTKNPFGFQINN 347          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_PASMU (UDP-glucose 4-epimerase OS=Pasteurella multocida GN=galE PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.165e-36
Identity = 71/131 (54.20%), Postives = 90/131 (68.70%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VA+G+ P+L+VFG+DY T DGTGVRDYIHV+DLA GH+ AL +  +   G  +YNLGTG G SVL+MV AFEK +  KIP     RRPGD    Y+    A+ ELNW A  G+++M +D W+W  KNP GY
Sbjct:  207 VAIGKLPQLSVFGSDYETHDGTGVRDYIHVVDLAIGHLKALDR-HEGDAGLHIYNLGTGSGYSVLDMVKAFEKVNDIKIPYKLVDRRPGDIATCYSDPSLAKTELNWTAARGLEQMMKDTWHWQKKNPKGY 336          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.165e-36
Identity = 75/130 (57.69%), Postives = 90/130 (69.23%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYG 392
            VA+GR  +L +FG DY T+DGTGVRDYIHV+DLA+GH+ AL  L   + G + YNLG GKG SVLEMV AFEKASG  +    S RR GD    +A    A++ELNW+   GIDEM RD WNW S+NP G
Sbjct:  207 VAIGRLEKLGIFGDDYPTEDGTGVRDYIHVMDLAEGHLKALDHLSAIE-GYKAYNLGAGKGYSVLEMVKAFEKASGGTVAYQISPRRDGDLAAFWADATLADKELNWRVSRGIDEMMRDTWNWQSQNPQG 335          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.042e-35
Identity = 72/132 (54.55%), Postives = 92/132 (69.70%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 398
            VAVG+ P+L+VFG DY+T DGTGVRDYIHV+DLA GH+ AL K  +   G  VYNLGTG G SVL+MV AFE A+G  IP     RRPGD  + Y++  KA  +L W+ + G+++M +D WNW   NP GY+
Sbjct:  207 VAVGKLPQLSVFGGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDA-GFHVYNLGTGTGYSVLDMVKAFEAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPNGYK 337          
The following BLAST results are available for this feature:
BLAST of CF504106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE_MOUSE1.046e-3960.31UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE... [more]
GALE_DICDI3.975e-3957.14UDP-glucose 4-epimerase OS=Dictyostelium discoideu... [more]
GALE_DROME5.192e-3958.33Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
GALE_SALTY2.849e-3757.25UDP-glucose 4-epimerase OS=Salmonella typhimurium ... [more]
GALE_SALTI2.849e-3757.25UDP-glucose 4-epimerase OS=Salmonella typhi GN=gal... [more]
GALE_ECOLI3.150e-3654.96UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]
GAL10_PACTA5.373e-3652.55Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GALE_PASMU9.165e-3654.20UDP-glucose 4-epimerase OS=Pasteurella multocida G... [more]
GALE_ERWAM9.165e-3657.69UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE_PASHA2.042e-3554.55UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-594 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504106 ID=CF504106; Name=CF504106; organism=Citrus sinensis; type=EST; length=521bp
AAGTTGCTGTTGGCAGGCGTCCAGAGCTGACAGTATTTGGAACTGATTAC
TCAACAAAGGATGGTACTGGGGTCCGTGATTACATTCATGTTATTGACTT
AGCTGATGGGCACATTGCTGCATTGCATAAGCTTGATGATCCTAAGATAG
GTTGTGAGGTGTACAACTTGGGAACGGGAAAAGGGACATCAGTTTTGGAG
ATGGTTGCAGCATTTGAAAAAGCCTCTGGAAAGAAAATTCCTCTTGTAAA
GTCTGGGAGGCGACCCGGTGACGCAGAAATTGTTTATGCATCAACAGGAA
AGGCAGAACGTGAATTGAATTGGAAGGCAAAATATGGCATTGACGAGATG
TGTAGGGATCAATGGAATTGGGCCAGCAAGAACCCTTATGGCTATGAATC
TTCCAACTCGACTAGCTAATAACTGGCATTTGTCATCCTTCTTAGTAGTT
CCTCGCTATATACAGTGTCTATTCTGTACACTTAATTATCAGATTTTTAA
GCTGAAAAACCTTGTGGTATT
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