CF504106

Overview
NameCF504106
Unique NameCF504106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.754e-30
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGY 395
            VA+G+  +L V+G DY T DG+G+RDYIHV+DLA+GH++ L  L     G  +YNLGTG G SVL M+  FE+ +GK IP     RRPGD    +AS   A  EL W AK  + +M +D W W   NP GY
Sbjct:  207 VAIGKLSKLLVYGNDYDTPDGSGIRDYIHVMDLAEGHLSTLINLTS---GFRIYNLGTGVGYSVLHMIKEFERITGKNIPFDIVSRRPGDIAECWASPELAHLELGWYAKRTLVDMLQDAWKWQKMNPNGY 334          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.859e-26
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYESS 404
            A+G  P L V GTDY T DGT +RDYI V DL D H+ AL+K +  K+G  +YN+GTG+G SV E V A +KA+G  I +    RRPGD   VY+   K   ELNW A+Y  + E     W W   +P GY S+
Sbjct:  275 ALGIIPGLKVKGTDYPTTDGTCIRDYIDVTDLVDAHVKALNKAEPSKVG--IYNVGTGRGRSVKEFVDACKKATGVNIKIEYLSRRPGDYAEVYSDPTKINTELNWTAQYTDLKESLSVAWRWQKSHPRGYGSN 406          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 5.041e-26
Identity = 65/134 (48.51%), Postives = 78/134 (58.21%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYESS 404
            A G  P L V GTDY T DGT VRDYI V DL D H+ AL K     +G  +YN+GTGKG SV E V A +KA+G  I +    RRPGD   VY+   K  R+LNW A+Y  + E     W W   +P+GY SS
Sbjct:  280 ARGVIPGLQVKGTDYKTGDGTCVRDYIDVTDLVDAHVKALEKAKPRNVG--IYNVGTGKGRSVKEFVEACKKATGVDIKVDFLPRRPGDYAEVYSDPAKILRDLNWSARYTNLQESLEVAWKWQKTHPHGYASS 411          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_LACCA (UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.267e-25
Identity = 60/136 (44.12%), Postives = 78/136 (57.35%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYESSN 407
            VA G R  L ++G DY TKDGT VRDY+HV+DLAD HI AL  LD        +N+G+  G S LE++ A  K +G++IP     RR GD   + AS+ KA   L WK  Y  ID++    WNW   +P G+   N
Sbjct:  197 VAAGTRTGLQIYGDDYPTKDGTNVRDYVHVVDLADAHILALKYLDAGN-KSSAFNIGSAHGFSNLEILNAARKVTGQEIPATMGPRRAGDPSTLIASSEKARDILGWKPNYDDIDKIIETAWNWHENHPEGFGDRN 331          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.267e-25
Identity = 64/131 (48.85%), Postives = 79/131 (60.31%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGY 395
            A+G  P L V GTDY T DGT VRDYI V DL D H+ AL+K +  K+G  +YN+GTGKG SV E V A +KA+G  I +    RRPGD   VY+   K   ELNW A++  + E  R  W W  K+  GY
Sbjct:  285 ALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNKAERGKVG--IYNVGTGKGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSDPAKINSELNWTAQHTDLLESLRVAWTWQKKHRSGY 413          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYES 401
            A G  P L V GTDY T DGT +RDYI V DL D H+ AL K    K+G  +YN+GTGKG SV E V A +KA+G +I +    RRPGD   VY+   K  ++LNW A++  + +  +  W W   +P+GY S
Sbjct:  305 ARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALEKAQPRKVG--IYNVGTGKGRSVKEFVEACKKATGVEIKVDFLPRRPGDYAEVYSDPTKILKDLNWTARFTNLQDSLQVAWRWQKIHPHGYNS 435          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: EXOB_RHILT (UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii GN=exoB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.573e-25
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEV-YNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKN 383
            A+GRR    VFG+DY T+DGT VRDYIHV+DLAD H+ A+  L   K G  V  NLGTG GT+V E++ A E+ S +  P+   GRR GD+  + A+  KA   L W  +Y + E+ R  W+W +K+
Sbjct:  200 ALGRRQGFKVFGSDYETRDGTCVRDYIHVLDLADAHVRAVEYL--LKGGDSVALNLGTGTGTTVKELLGAIEEVSNRPFPVEYIGRREGDSHTLVANNDKARDVLGWVPQYDLSEIIRSAWDWHAKS 324          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.506e-25
Identity = 59/135 (43.70%), Postives = 85/135 (62.96%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCE--VYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYE 398
            VA G R ++ +FG DY+T DGT VRDY+H  DLAD H+ A+  L   + G E   +NLG+  G S L+++ A  K +GK+IP  K+ RRPGD +I+ AS+ KA   L WK ++  I+++    W W S +P GY+
Sbjct:  198 VAQGVREKIMIFGDDYNTPDGTNVRDYVHPFDLADAHLLAVEYL---RKGNESTAFNLGSSTGFSNLQILEAARKVTGKEIPAEKADRRPGDPDILIASSEKARTVLGWKPQFDNIEKIIASAWAWHSSHPKGYD 329          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.242e-24
Identity = 62/134 (46.27%), Postives = 76/134 (56.72%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYESS 404
            A+G  P L V GTDY T DGT +RDYI V DL D H+ AL K    K+G  +YN+GTG G SV E V A + A+G  I +    RRPGD   VY+   K   ELNW A+Y  + E     W W   +P GY S+
Sbjct:  260 ALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVG--IYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDELNWTARYIDLRESLSTAWKWQKAHPNGYGSA 391          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.621e-24
Identity = 63/137 (45.99%), Postives = 80/137 (58.39%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWAS--KNPYGYESSN 407
            A G  P L + GTDY T DGT VRDYI V DL D H+ AL K    K+G  +YN+GTGKG+SV E V A +KA+G +I +    RR GD   VY+   K  +ELNW AK+  + E     W W    +N YG  +S+
Sbjct:  281 ARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQKAKPRKVG--IYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGYGLTTSS 415          
The following BLAST results are available for this feature:
BLAST of CF504106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE_YEREN5.754e-3048.85UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]
ARAE3_ORYSJ3.859e-2647.01Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
ARAE3_ARATH5.041e-2648.51Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
GALE_LACCA3.267e-2544.12UDP-glucose 4-epimerase OS=Lactobacillus casei GN=... [more]
ARAE1_ORYSJ3.267e-2548.85Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
ARAE4_ARATH4.267e-2545.86Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
EXOB_RHILT5.573e-2546.46UDP-glucose 4-epimerase OS=Rhizobium leguminosarum... [more]
GALE_STRTR9.506e-2543.70UDP-glucose 4-epimerase OS=Streptococcus thermophi... [more]
ARAE2_ORYSJ1.242e-2446.27Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
ARAE1_ARATH1.621e-2445.99UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-594 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504106 ID=CF504106; Name=CF504106; organism=Citrus sinensis; type=EST; length=521bp
AAGTTGCTGTTGGCAGGCGTCCAGAGCTGACAGTATTTGGAACTGATTAC
TCAACAAAGGATGGTACTGGGGTCCGTGATTACATTCATGTTATTGACTT
AGCTGATGGGCACATTGCTGCATTGCATAAGCTTGATGATCCTAAGATAG
GTTGTGAGGTGTACAACTTGGGAACGGGAAAAGGGACATCAGTTTTGGAG
ATGGTTGCAGCATTTGAAAAAGCCTCTGGAAAGAAAATTCCTCTTGTAAA
GTCTGGGAGGCGACCCGGTGACGCAGAAATTGTTTATGCATCAACAGGAA
AGGCAGAACGTGAATTGAATTGGAAGGCAAAATATGGCATTGACGAGATG
TGTAGGGATCAATGGAATTGGGCCAGCAAGAACCCTTATGGCTATGAATC
TTCCAACTCGACTAGCTAATAACTGGCATTTGTCATCCTTCTTAGTAGTT
CCTCGCTATATACAGTGTCTATTCTGTACACTTAATTATCAGATTTTTAA
GCTGAAAAACCTTGTGGTATT
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