CF504106

Overview
NameCF504106
Unique NameCF504106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.118e-24
Identity = 57/137 (41.61%), Postives = 84/137 (61.31%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGH-IAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYESSN 407
            VA+G+R  + +FG DY T+DG+ +RDYIHV+DLA+ H +A  H   D + G   +NLG GKG SV E++    + +G  IP   + RR GD   + AS+ KA+  L W+ KY  ++ M    WNW  ++P+GY + N
Sbjct:  196 VALGQRERVAIFGDDYQTEDGSCIRDYIHVMDLANAHYLACEHLRKDGQSGS--FNLGNGKGFSVKEVIEVCRQVTGHPIPAEIAPRRSGDPASLIASSEKAQTILGWEPKYPSLETMVEHAWNWHKEHPHGYSTEN 330          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 6.162e-24
Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYESSNSTS 416
            A G  P L + GTDY T DGT VRDYI V DL D H+ AL K    K+G  ++N+GTGKG+SV E V A +KA+G  I +    RR GD   VY+   K + ELNW AK+  + E  +  W W   +  GY SS+  S
Sbjct:  280 ARGIIPGLQIKGTDYKTVDGTCVRDYIDVTDLVDAHVKALEKAKPRKVG--IFNVGTGKGSSVKEFVEACKKATGVDIKVDYLERRAGDYAEVYSDPRKIKEELNWTAKHTNLQESLKMAWRWQKLHRSGYGSSSLVS 415          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.793e-23
Identity = 56/133 (42.11%), Postives = 80/133 (60.15%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYE 398
            VA G R ++ +FG DY+T DGT VRDY+H  DLAD H+ AL+ L         +NLG+  G S L+++ A  K +G+KIP  K+ RR GD + + AS+ KA   L WK ++  I+++    W W S  P GY+
Sbjct:  199 VAQGVREKIMIFGDDYNTPDGTNVRDYVHPFDLADAHLLALNYLRQGN-PSTAFNLGSSTGFSNLQILEAARKVTGQKIPAEKAARRSGDPDTLIASSEKAREVLGWKPQFDDIEKIIASAWAWHSSYPKGYD 330          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: EXOB_RHIME (UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=exoB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.994e-23
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCE--VYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYG 392
            A+GRR    VFGTDY T+DGT VRDYIHV+DLAD H+ A+  L +   G E    NLGTG GT+V E++ A EK + +   +  + RR GD+  + A+  KA + L W+ +Y +  +    WNW S+   G
Sbjct:  200 ALGRREGFKVFGTDYDTRDGTCVRDYIHVLDLADAHVRAVDYLLE---GGESVALNLGTGTGTTVKELLDAIEKVAKRPFNIGYAERREGDSTTLVANNDKARQVLGWEPQYDLAAITESAWNWHSRRNQG 327          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.416e-22
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = 3
Query:    6 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAAL-HKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYE 398
            A+    + T+FG DY TKDGT VRDY+ V DL D HI AL H +   K   +V+NLGT  G S LE++ + +K +G  IP     RR GD + + A + KA   L WK K+  +D++    W W   +P GYE
Sbjct:  198 AISGDGKFTIFGDDYDTKDGTNVRDYVQVEDLIDAHILALKHMMKTNK--SDVFNLGTAHGYSNLEILESAKKVTGIDIPYTMGPRRGGDPDSLVADSTKARTVLGWKPKHENVDDVIATAWKWHKSHPKGYE 328          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: EXOB_AZOBR (UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.862e-21
Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = 3
Query:    9 VGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYG-IDEMCRDQWNW 371
            +GRRP L +FGTDY T DGT +RDYIHV DLAD H+ AL  L     G  + N G G+G SV E+V   E+ SG+++P   + RRPGD   + A   +   +L W  K+  +D + R   +W
Sbjct:  207 LGRRPPLAIFGTDYDTPDGTCIRDYIHVSDLADAHVLALLHLRRGG-GSLLMNCGYGRGASVREVVRTLEEVSGEQVPATFADRRPGDPPQLVAGADRIREQLGWVPKHDRLDGIVRSALSW 327          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 398
            VA GRR  ++V+G DY T D T VRDYIHV DLA+ H+ A+ +   P     + NLG G G SV E+V    + +G  IP + + RR  D  ++ AS G A  +L W        +  D W W S +P GY+
Sbjct:  198 VAQGRREAISVYGDDYPTPD-TCVRDYIHVADLAEAHLLAVRRR--PGNEHLICNLGNGNGFSVREVVETVRRVTGHPIPEIMAPRRGRDPAVLVASAGTAREKLGWNPSRADLAIVSDAWEWHSSHPKGYD 326          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.051e-19
Identity = 49/127 (38.58%), Postives = 78/127 (61.42%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWK-AKYGIDEMCRDQWNWASK 380
            VA+G R ++ +FG D+ T+DGT +RDYIH+ DLAD HI AL    + +    ++NLG+G+G SV +++    + +G  IP   + RR GD  ++ AS+ KA+ EL WK  +  +  +  D W + S+
Sbjct:  193 VALGHRDKIFMFGDDWPTEDGTPIRDYIHIRDLADAHILALQ--SNVEGSHRIFNLGSGEGYSVKQVIDTCREVTGHLIPAEVAPRRAGDPAVLIASSAKAQSELGWKPQRTDLHTIVSDAWAFTSQ 317          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_CORGL (UDP-glucose 4-epimerase OS=Corynebacterium glutamicum GN=galE PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 3
Query:    3 VAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWAS 377
            VA G R +  +FG D+ T DGT VRDYIH++DLA  H+ AL   +  K    ++NLG+G G SV ++V    + +G  IP   + RR GD   + AS+ KA++EL W  ++  +  +  D W + S
Sbjct:  193 VATGHREKTFMFGDDWPTPDGTAVRDYIHILDLAKAHVLALESNEAGK--HRIFNLGSGDGYSVKQVVEMCREVTGHPIPAEVAPRRAGDPATLIASSEKAKQELGWTPEHTDLRTIVEDAWAFTS 316          
BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_MYCPN (UDP-glucose 4-epimerase OS=Mycoplasma pneumoniae GN=galE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   33 VFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLD-DPKIGCEVYNLGTGKGTSVLEMVAAFEKA-SGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQ 362
            ++G DY TKDG+ +RDYIHV+DL D H+ A   L  +PK+  E +NLG+G+G S  E++   +   + +++ L    RR GD  ++     KA+R LN++    + +M  D+
Sbjct:  216 LYGDDYDTKDGSCIRDYIHVVDLCDAHLLAWKWLQANPKVRFESFNLGSGQGFSNWEVINTAQAIFAPEQLQLKIESRRAGDPPVLVVDCTKAKRLLNFQPTRSLHKMLSDE 327          
The following BLAST results are available for this feature:
BLAST of CF504106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE_BACHD2.118e-2441.61UDP-glucose 4-epimerase OS=Bacillus halodurans GN=... [more]
ARAE2_ARATH6.162e-2445.65Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
GALE_STRMU1.793e-2342.11UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
EXOB_RHIME3.994e-2343.51UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=e... [more]
GALE_LACHE4.416e-2242.11UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
EXOB_AZOBR2.862e-2143.44UDP-glucose 4-epimerase OS=Azospirillum brasilense... [more]
GALE_STRLI1.571e-1940.15UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]
GALE_CORDI2.051e-1938.58UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
GALE_CORGL3.868e-1838.89UDP-glucose 4-epimerase OS=Corynebacterium glutami... [more]
GALE_MYCPN5.780e-1436.61UDP-glucose 4-epimerase OS=Mycoplasma pneumoniae G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-594 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504106 ID=CF504106; Name=CF504106; organism=Citrus sinensis; type=EST; length=521bp
AAGTTGCTGTTGGCAGGCGTCCAGAGCTGACAGTATTTGGAACTGATTAC
TCAACAAAGGATGGTACTGGGGTCCGTGATTACATTCATGTTATTGACTT
AGCTGATGGGCACATTGCTGCATTGCATAAGCTTGATGATCCTAAGATAG
GTTGTGAGGTGTACAACTTGGGAACGGGAAAAGGGACATCAGTTTTGGAG
ATGGTTGCAGCATTTGAAAAAGCCTCTGGAAAGAAAATTCCTCTTGTAAA
GTCTGGGAGGCGACCCGGTGACGCAGAAATTGTTTATGCATCAACAGGAA
AGGCAGAACGTGAATTGAATTGGAAGGCAAAATATGGCATTGACGAGATG
TGTAGGGATCAATGGAATTGGGCCAGCAAGAACCCTTATGGCTATGAATC
TTCCAACTCGACTAGCTAATAACTGGCATTTGTCATCCTTCTTAGTAGTT
CCTCGCTATATACAGTGTCTATTCTGTACACTTAATTATCAGATTTTTAA
GCTGAAAAACCTTGTGGTATT
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