CF504106

Overview
NameCF504106
Unique NameCF504106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10875 contig Csv1_Contig10875:140..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504106 vs. ExPASy Swiss-Prot
Match: GALE_MYCGE (UDP-glucose 4-epimerase OS=Mycoplasma genitalium GN=galE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.410e-12
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:   33 VFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPK-IGCEVYNLGTGKGTSVLEMVAAFEKA-SGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNW 371
            ++G DY+TKDG+ +RDYIHV D+ + H      L+D + I  E +NLG+G GTS LE++   +K     ++ L    +R  D  I+ A+  KA++   +K    + +M  D+ N+
Sbjct:  217 LYGNDYATKDGSCIRDYIHVYDICNAHFLLWKWLNDHRQIKFETFNLGSGIGTSNLEVIDIAKKVFYPSRLNLEIRPKRSWDPAILVANVAKAKQTFQFKITRNLKDMISDERNF 331
The following BLAST results are available for this feature:
BLAST of CF504106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
GALE_MYCGE5.410e-1234.78UDP-glucose 4-epimerase OS=Mycoplasma genitalium G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-594 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504106 ID=CF504106; Name=CF504106; organism=Citrus sinensis; type=EST; length=521bp
AAGTTGCTGTTGGCAGGCGTCCAGAGCTGACAGTATTTGGAACTGATTAC
TCAACAAAGGATGGTACTGGGGTCCGTGATTACATTCATGTTATTGACTT
AGCTGATGGGCACATTGCTGCATTGCATAAGCTTGATGATCCTAAGATAG
GTTGTGAGGTGTACAACTTGGGAACGGGAAAAGGGACATCAGTTTTGGAG
ATGGTTGCAGCATTTGAAAAAGCCTCTGGAAAGAAAATTCCTCTTGTAAA
GTCTGGGAGGCGACCCGGTGACGCAGAAATTGTTTATGCATCAACAGGAA
AGGCAGAACGTGAATTGAATTGGAAGGCAAAATATGGCATTGACGAGATG
TGTAGGGATCAATGGAATTGGGCCAGCAAGAACCCTTATGGCTATGAATC
TTCCAACTCGACTAGCTAATAACTGGCATTTGTCATCCTTCTTAGTAGTT
CCTCGCTATATACAGTGTCTATTCTGTACACTTAATTATCAGATTTTTAA
GCTGAAAAACCTTGTGGTATT
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