CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3685 contig Csv1_Contig3685:811..1228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURM1 (Phosphoserine aminotransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=serC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.431e-32
Identity = 72/130 (55.38%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +KA+LLY+ IDGS+ FY   VE +VRS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  232 NNSLYNTPPTYAIYIAGLVFQWLKRQGGLGAIEARNIEKAKLLYDTIDGSS-FYLNKVEPAVRSRMNVPFFLADESRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFEQRCA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURCM (Phosphoserine aminotransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=serC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 72/130 (55.38%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +KA+LLY+ ID S GFY   VE +VRS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  232 NNSLYNTPPTYAIYIAGLVFQWLKRQGGLEAIEARNIEKAKLLYDTIDAS-GFYLNKVEPAVRSRMNVPFFLADETRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFEQRGA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURA4 (Phosphoserine aminotransferase OS=Burkholderia ambifaria (strain MC40-6) GN=serC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.481e-32
Identity = 72/130 (55.38%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +KA+LLY+ ID S GFY   VE +VRS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  232 NNSLYNTPPTYAIYIAGLVFQWLKRQGGLEAIEARNIEKAKLLYDTIDAS-GFYLNKVEPAVRSRMNVPFFLADETRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFEQRGA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LEPIN (Phosphoserine aminotransferase OS=Leptospira interrogans GN=serC PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.644e-32
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 393
            +N SLYNTP  Y IY+  LVFE+LL+LGG+  +EK+N +KA+L+Y+ ID S+  Y CPV+K  RS MNV F L+  +L            +  L GHR VGG RASIYN+MPL GV+KLV+FMKDF++K
Sbjct:  235 KNRSLYNTPSTYSIYIAKLVFEWLLKLGGIEAIEKVNEQKAKLIYDFIDSSS-LYVCPVQKRARSKMNVVFLLKDKNLDSKFLDEAEKNGLHGLGGHRLVGGFRASIYNSMPLTGVQKLVSFMKDFESK 362          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LEPIC (Phosphoserine aminotransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=serC PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.644e-32
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 393
            +N SLYNTP  Y IY+  LVFE+LL+LGG+  +EK+N +KA+L+Y+ ID S+  Y CPV+K  RS MNV F L+  +L            +  L GHR VGG RASIYN+MPL GV+KLV+FMKDF++K
Sbjct:  235 KNRSLYNTPSTYSIYIAKLVFEWLLKLGGIEAIEKVNEQKAKLIYDFIDSSS-LYVCPVQKRARSKMNVVFLLKDKNLDSKFLDEAEKNGLHGLGGHRLVGGFRASIYNSMPLTGVQKLVSFMKDFESK 362          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BACCR (Phosphoserine aminotransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=serC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.793e-31
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            + +NNSLYNTPP + IY+  LV E+L E GG++ +E+ NR K+ LLYN +D S   +  PV+ + RS MN+PFT    +L            +V LKGHRSVGGMRASIYNAMP+ GV++LV +MK+F+ ++
Sbjct:  229 YSKNNSLYNTPPSFSIYVTKLVLEWLKEQGGVSAIEEQNRMKSSLLYNFLDESK-LFTSPVDPTYRSLMNIPFTTPSEELNSEFLQKAKERGLVTLKGHRSVGGMRASIYNAMPVQGVQQLVNYMKEFELEN 359          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURS3 (Phosphoserine aminotransferase OS=Burkholderia sp. (strain 383) GN=serC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.954e-31
Identity = 70/130 (53.85%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +KA+LLY+ ID S+ FY   VE + RS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  232 NNSLYNTPPTYAIYIAGLVFQWLKRQGGLEAIEARNIEKAKLLYDTID-SSSFYLNKVEPAARSRMNVPFFLADETRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFEQRGA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_VIBCH (Phosphoserine aminotransferase OS=Vibrio cholerae GN=serC PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.471e-31
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            E  S++NTPP +  Y+ GLVF++L   GG+  +E++NR KA LLY  ID S+ FYR  +    RS MNVPF L K +L            +V LKGHR VGGMRASIYNAMPL GV+ LV FMK+F+A++A
Sbjct:  235 EQESMFNTPPTFAWYLSGLVFQWLKAQGGVKAIEEVNRAKAALLYGYIDSSD-FYRNEIHPDNRSLMNVPFQLAKPELDDTFLELAEARGLVSLKGHRVVGGMRASIYNAMPLEGVQALVDFMKEFEAQYA 364          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ENT38 (Phosphoserine aminotransferase OS=Enterobacter sp. (strain 638) GN=serC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.471e-31
Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N+S++NTPP +  Y+ GLVF++L + GG+ +++K+N++KAELLY+ IDGS+ FYR  V K+ RS MNVPF L  S+L            +  LKGHR VGGMRASIYNAMPL GV  L  FM DF+ +H
Sbjct:  232 NDNDSMFNTPPTFAWYLSGLVFKWLKKNGGVAQMDKINQQKAELLYSTIDGSD-FYRNDVAKANRSRMNVPFQLADSNLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVNTLTDFMVDFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BACSK (Phosphoserine aminotransferase OS=Bacillus clausii (strain KSM-K16) GN=serC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.471e-31
Identity = 70/131 (53.44%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            ++NSLYNTPP + IYM GLV ++L E GGL E+E  N+ KA+LLY  ID S+GFY     +  RS MNV FTL    L             V L GHRSVGG+RASIYNA+P A  E LV FMK F+ KHA
Sbjct:  228 KSNSLYNTPPVFSIYMLGLVLDWLEESGGLTEIENRNKAKAQLLYEAIDESDGFYIGHAAQDSRSNMNVTFTLANDALTSVFLQEAKEAGFVGLNGHRSVGGLRASIYNAVPYASCEALVDFMKQFKNKHA 358          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_BURM13.431e-3255.38Phosphoserine aminotransferase OS=Burkholderia mul... [more]
SERC_BURCM4.481e-3255.38Phosphoserine aminotransferase OS=Burkholderia amb... [more]
SERC_BURA44.481e-3255.38Phosphoserine aminotransferase OS=Burkholderia amb... [more]
SERC_LEPIN7.644e-3253.49Phosphoserine aminotransferase OS=Leptospira inter... [more]
SERC_LEPIC7.644e-3253.49Phosphoserine aminotransferase OS=Leptospira inter... [more]
SERC_BACCR3.793e-3149.24Phosphoserine aminotransferase OS=Bacillus cereus ... [more]
SERC_BURS34.954e-3153.85Phosphoserine aminotransferase OS=Burkholderia sp.... [more]
SERC_VIBCH6.471e-3151.91Phosphoserine aminotransferase OS=Vibrio cholerae ... [more]
SERC_ENT386.471e-3151.91Phosphoserine aminotransferase OS=Enterobacter sp.... [more]
SERC_BACSK6.471e-3153.44Phosphoserine aminotransferase OS=Bacillus clausii... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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