CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_XANCB (Phosphoserine aminotransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 1 
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H   +S+ NTPP +  Y+ GL  +++LE GG+    + N +KA L+Y  IDGS GFYR  V  +VRS MN+PF L    L            ++ LKGH++VGG+RAS+YNAMP+AG + LVAFM DFQ +H
Sbjct:  229 HVARDSMLNTPPTWNWYLLGLTVKWMLEQGGVAAFAQCNAEKAALVYGAIDGSGGFYRNQVMPTVRSRMNIPFFLGDEQLDALFVSESKAAGLLALKGHKAVGGIRASLYNAMPVAGAQALVAFMHDFQQRH 360
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_XANC8 (Phosphoserine aminotransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 1 
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H   +S+ NTPP +  Y+ GL  +++LE GG+    + N +KA L+Y  IDGS GFYR  V  +VRS MN+PF L    L            ++ LKGH++VGG+RAS+YNAMP+AG + LVAFM DFQ +H
Sbjct:  229 HVARDSMLNTPPTWNWYLLGLTVKWMLEQGGVAAFAQRNAEKAALVYGAIDGSGGFYRNQVMPTVRSRMNIPFFLGDEQLDALFVSESKAAGLLALKGHKAVGGIRASLYNAMPVAGAQALVAFMHDFQQRH 360
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_XANAC (Phosphoserine aminotransferase OS=Xanthomonas axonopodis pv. citri GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 60/128 (46.88%), Postives = 84/128 (65.62%), Query Frame = 1 
Query:   13 NSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +S+ NTPP +  Y+ GL  +++LE GG+ E  + N +KA L+Y  IDGS GFYR  ++ +VRS MN+PF L    L            ++ LKGH++VGG+RAS+YNAMP+AG + L AFM DFQ +H
Sbjct:  233 DSMLNTPPTWNWYLLGLTVKWMLEQGGVQEFARRNAEKAALVYGAIDGSGGFYRNLIKPAVRSRMNIPFFLPDERLDALFVSESKAAGLLALKGHKAVGGIRASLYNAMPVAGAQALAAFMHDFQQRH 360
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHEHH (Phosphoserine aminotransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            EN+S+YNTPP +  Y+   VF +L  +GG+ E+EK+N +KA+ LY  ID  + FY   V K  RS MNV F L  S+L            +V LKGHRSVGGMRASIYNAMPL GV+ LV FM+ F AKH+
Sbjct:  234 ENDSMYNTPPTFAWYLAAEVFSWLKSVGGVCEMEKLNLEKAKRLYQCIDELD-FYVSGVAKQNRSRMNVTFQLTNSELNSQFLEEAQVAGLVALKGHRSVGGMRASIYNAMPLEGVDTLVEFMQAFAAKHS 363
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SALTY (Phosphoserine aminotransferase OS=Salmonella typhimurium GN=serC PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N+S++NTPP +  Y+ GLVF++L   GG+  + K+N++KAELLY VID S+ FYR  V ++ RS MNVPF L  + L            +  LKGHR VGGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  232 NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SALPC (Phosphoserine aminotransferase OS=Salmonella paratyphi C (strain RKS4594) GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N+S++NTPP +  Y+ GLVF++L   GG+  + K+N++KAELLY VID S+ FYR  V ++ RS MNVPF L  + L            +  LKGHR VGGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  232 NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SALNS (Phosphoserine aminotransferase OS=Salmonella newport (strain SL254) GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N+S++NTPP +  Y+ GLVF++L   GG+  + K+N++KAELLY VID S+ FYR  V ++ RS MNVPF L  + L            +  LKGHR VGGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  232 NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SALCH (Phosphoserine aminotransferase OS=Salmonella choleraesuis GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 65/131 (49.62%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N+S++NTPP +  Y+ GLVF++L   GG+  + K+N++KAELLY VID S+ FYR  V ++ RS MNVPF L  + L            +  LKGHR VGGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  232 NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_NEIMF (Phosphoserine aminotransferase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 63/132 (47.73%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H   + +YNTP  Y IYM GLVF +L   GG+ ++E +NR KA+ LY  IDGS GFY   +  + RS MNV F     +L            +  LKG++SVGGMRASIYNAMPL GV  L  FM+DFQ ++
Sbjct:  236 HINRDGMYNTPSTYAIYMSGLVFRWLQAQGGVKKIEAVNRLKAQTLYETIDGSGGFYINRIRPNARSKMNVVFQTRDEELDRRFVLEAELQGLCLLKGYKSVGGMRASIYNAMPLEGVRALADFMRDFQRRY 367
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ESCF3 (Phosphoserine aminotransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=serC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.349e-28
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N+S++NTPP +  Y+ GLVF++L   GG+  ++K+N++KAELLY  ID S+ FYR  V K+ RS MNVPF L  + L            +  LKGHR VGGMRASIYNAMPL GV  L  FM DF+ +H
Sbjct:  232 NDNDSMFNTPPTFAWYLSGLVFKWLKANGGVAAMDKINQQKAELLYGAIDNSD-FYRNDVAKANRSRMNVPFQLADNALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVIALTDFMADFERRH 361
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_XANCB1.349e-2846.97Phosphoserine aminotransferase OS=Xanthomonas camp... [more]
SERC_XANC81.349e-2846.97Phosphoserine aminotransferase OS=Xanthomonas camp... [more]
SERC_XANAC1.349e-2846.88Phosphoserine aminotransferase OS=Xanthomonas axon... [more]
SERC_SHEHH1.349e-2851.91Phosphoserine aminotransferase OS=Shewanella halif... [more]
SERC_SALTY1.349e-2849.62Phosphoserine aminotransferase OS=Salmonella typhi... [more]
SERC_SALPC1.349e-2849.62Phosphoserine aminotransferase OS=Salmonella parat... [more]
SERC_SALNS1.349e-2849.62Phosphoserine aminotransferase OS=Salmonella newpo... [more]
SERC_SALCH1.349e-2849.62Phosphoserine aminotransferase OS=Salmonella chole... [more]
SERC_NEIMF1.349e-2847.73Phosphoserine aminotransferase OS=Neisseria mening... [more]
SERC_ESCF31.349e-2850.38Phosphoserine aminotransferase OS=Escherichia ferg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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