CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SODGM (Phosphoserine aminotransferase OS=Sodalis glossinidius (strain morsitans) GN=serC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 67/130 (51.54%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            EN+S++NTPP +  Y+ GLVF++L   GGL E++K N+ KA LLY  ID S  FYR  V  + RS MNVPF L  S L            +  LKGHR VGGMRAS+YNA+PL GV+ LV FM DF  +H
Sbjct:  232 ENDSMFNTPPTFAWYLSGLVFKWLKAQGGLAEMDKRNQAKASLLYRTIDESY-FYRNTVASANRSRMNVPFQLADSKLDALFLQESFAAGLHALKGHRVVGGMRASLYNAVPLEGVQALVDFMLDFARRH 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SALAR (Phosphoserine aminotransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=serC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N+S++NTPP +  Y+ GLVF++L   GG+  + K+N++KA+LLY VID S+ FYR  V ++ RS MNVPF L  + L            +  LKGHR VGGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  232 NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAQLLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADNALDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_POLSJ (Phosphoserine aminotransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=serC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 64/136 (47.06%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLL-----ELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            +N+S+YNTPP Y IY+ GL F++L      ++ G+  +EK N  KA+LLY+ ID S  ++   V    RS MNVPF L                 ++QLKGH+SVGGMRASIYNAMPLAG+E L+ +M++F+ KHA
Sbjct:  234 DNHSMYNTPPTYAIYIAGLTFQWLKRQKEGDVTGIAAMEKRNLAKAQLLYDAIDRSQLYFN-RVGSECRSRMNVPFLLRDESRNEAFLAGAKAHSLLQLKGHKSVGGMRASIYNAMPLAGIEALIGYMREFEQKHA 368          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_NEIMB (Phosphoserine aminotransferase OS=Neisseria meningitidis serogroup B GN=serC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 62/132 (46.97%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H   + +YNTP  Y IYM GLVF +L   GG+ ++E +NR KA+ LY  IDGS+GFY   +  + RS MNV F     +L            +  LKG+++VGGMRASIYNAMPL GV  L  FM+DFQ ++
Sbjct:  236 HINRDGMYNTPSTYAIYMSGLVFRWLQAQGGVKKIEAVNRLKAQTLYETIDGSDGFYINRIRPNARSKMNVVFQTGDEELDRRFVLEAELQGLCLLKGYKTVGGMRASIYNAMPLEGVRALADFMRDFQRRY 367          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_NEIMA (Phosphoserine aminotransferase OS=Neisseria meningitidis serogroup A GN=serC PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H   + +YNTP  Y IYM GLVF +L   GG+ ++E +NR KA+ LY  IDGS GFY   +  + RS MNV F     +L            +  LKG+++VGGMRASIYNAMPL GV  L  FM+DFQ ++
Sbjct:  236 HINRDGMYNTPSTYAIYMSGLVFRWLQAQGGVKKIEAVNRLKAQTLYETIDGSGGFYINRIRPNARSKMNVVFQTGDEELDRRFVLEAELQGLCLLKGYKTVGGMRASIYNAMPLEGVRALADFMRDFQRRY 367          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_HERA2 (Phosphoserine aminotransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=serC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 64/131 (48.85%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 393
            H +NNSLYNTPP + +YM  LV  ++ E GGL  + + N +KA ++YN ID S GFYR       RS MNV F L   +L            M+ L GHRSVGG+RASIYNAM + GVE L +FM  F AK
Sbjct:  228 HAKNNSLYNTPPTFGVYMLNLVLAWIQEQGGLAGMAEYNTRKANVVYNAIDNSGGFYRGHAVADSRSQMNVTFNLPTQELEKQFLAEAKAQGMIGLPGHRSVGGVRASIYNAMSIEGVEALASFMAHFAAK 358          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHEPA (Phosphoserine aminotransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=serC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            EN+S+YNTPP +  Y+   VF +L  +GG+ E+EK+N +KA  LY  ID  + FY   V K  RS MN+ F L  S L            +V LKGHRSVGGMRAS+YNAMPLAGV+ LV FM+ F AK+A
Sbjct:  234 ENDSMYNTPPTFAWYLAAEVFAWLKCVGGVTEMEKLNIEKARRLYECIDELD-FYVSGVAKENRSRMNITFQLTNSQLDSQFLAEAQAAGLVALKGHRSVGGMRASLYNAMPLAGVDALVGFMRAFAAKNA 363          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_RHOFD (Phosphoserine aminotransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=serC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            +N S++NTPP Y IY+ GLVF++L   GG+  +E  N+ KA LLY+ ID S  +Y   V  + RS MNVPF L    L            ++QLKGH+SVGGMRASIYNAMP+ GV+ LV ++ +FQ + +
Sbjct:  241 DNQSMFNTPPTYAIYIAGLVFQWLKRQGGIAAMEARNQAKAALLYDAIDNSQLYYN-KVAPNCRSRMNVPFFLRDESLNDAFLAGAREHGLLQLKGHKSVGGMRASIYNAMPMEGVQALVNYLHEFQKRRS 370          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LACLS (Phosphoserine aminotransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=serC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 62/131 (47.33%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPV-EKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +N S+YNTPP + IY+ GLVF+++ E GG+ ++E +NR+KA +LY++ID S+ FY+ PV  ++ RS  NV FT    +L               +KGHRSVGGMRASIYNA P+ GV +LV FMK+F+ ++
Sbjct:  235 QNGSMYNTPPTFAIYLAGLVFKWVKEQGGVKKLEAINRQKARMLYDLIDQSD-FYQSPVLNEAERSICNVVFTSPSKELDALFVQKAEEKGFKSIKGHRSVGGMRASIYNAFPIEGVLELVKFMKEFEEEN 364          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_HAES1 (Phosphoserine aminotransferase OS=Haemophilus somnus (strain 129Pt) GN=serC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +N+S+ NTPP +  Y+C LVF+YLL  GG+ E+ K+NR+KA+LLY+ +D S+ FY   V    RS MNV FT    +L            +  LKGH+ +GGMRASIYNAMP+ G++ L+ FM+ F+A++
Sbjct:  229 KNSSMINTPPTFAWYLCSLVFKYLLAQGGIKEMAKLNREKAKLLYDFLDQSD-FYHNVVAPKNRSLMNVTFTTNNDELNAKFVAEATACGLQALKGHKVLGGMRASIYNAMPIEGIKALIEFMRKFEAEN 357          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_SODGM3.926e-2851.54Phosphoserine aminotransferase OS=Sodalis glossini... [more]
SERC_SALAR3.926e-2848.85Phosphoserine aminotransferase OS=Salmonella arizo... [more]
SERC_POLSJ3.926e-2847.06Phosphoserine aminotransferase OS=Polaromonas sp. ... [more]
SERC_NEIMB3.926e-2846.97Phosphoserine aminotransferase OS=Neisseria mening... [more]
SERC_NEIMA5.127e-2846.97Phosphoserine aminotransferase OS=Neisseria mening... [more]
SERC_HERA25.127e-2848.85Phosphoserine aminotransferase OS=Herpetosiphon au... [more]
SERC_SHEPA6.696e-2851.15Phosphoserine aminotransferase OS=Shewanella peale... [more]
SERC_RHOFD6.696e-2847.33Phosphoserine aminotransferase OS=Rhodoferax ferri... [more]
SERC_LACLS6.696e-2847.33Phosphoserine aminotransferase OS=Lactococcus lact... [more]
SERC_HAES16.696e-2846.15Phosphoserine aminotransferase OS=Haemophilus somn... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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