CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHEB2 (Phosphoserine aminotransferase OS=Shewanella baltica (strain OS223) GN=serC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 63/131 (48.09%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            E++S++NTPP +  Y+   VF +L   GG++ + K+N++KA++LY  IDG N FYR  V  + RS MNV F L    L            +V LKGHR VGGMRAS+YNAMPL GV  LV FM +F AKH+
Sbjct:  234 EHDSMFNTPPTFAWYLAAEVFAWLRSTGGISSIAKINQQKAQMLYQCIDG-NAFYRNGVVAANRSQMNVTFQLVNEALDSEFLKQAQIAGLVALKGHRIVGGMRASLYNAMPLDGVIALVKFMNEFAAKHS 363          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_RUTMC (Phosphoserine aminotransferase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=serC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            N+S+YNTP  Y  Y    VFE+L + GGL+ + K+N+ KA+ LY+ I+GS+ FY  PV    RS+MNVPF L    L            ++ LKGHRSVGGMRASIYNAMP  G+ +LV FMK F+ ++
Sbjct:  231 NDSMYNTPSTYSWYAASRVFEWLKQQGGLSAMAKINQTKAKTLYDAINGSD-FYSNPVAIKYRSWMNVPFLLADESLNGFFLEKAIANNLITLKGHRSVGGMRASIYNAMPQDGINELVNFMKVFEKEN 358          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_PSEFS (Phosphoserine aminotransferase OS=Pseudomonas fluorescens (strain SBW25) GN=serC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +N S+YNTPP +  Y+ GLVFE+L E GG+  + K+N +K   LY+ ID S G Y  P+  + RS+MNVPF L    L            ++ LKGHRSVGGMRASIYNA+ +  ++ L+A+M +F+ +H
Sbjct:  232 DNGSMYNTPPAFAWYLSGLVFEWLKEQGGVAAMGKLNEEKKRTLYDFIDAS-GLYSNPINLTDRSWMNVPFRLADDRLDKPFLAGADERGLLNLKGHRSVGGMRASIYNAVDINAIKALIAYMAEFEKEH 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_DESAA (Phosphoserine aminotransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=serC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLE-LGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            + NS+YNTPPC+ IY  GLV +++ E +GGL ++E  NRKKA+ LY++ D S+ FY    +K  RS MNV F L   DL            +  LKGHRSVGG RASIYN     G+E LV FMK+F+ K+
Sbjct:  231 DKNSMYNTPPCFAIYTVGLVVKWIEETIGGLEKMEARNRKKADTLYSIFDSSD-FYSGTADKDSRSLMNVTFRLPSEDLEKAFVAQALENGLGGLKGHRSVGGCRASIYNPTSQEGIEALVDFMKEFEKKN 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ACIAC (Phosphoserine aminotransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=serC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.403e-27
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLL-----ELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            EN S++NTPP + IY+ GL F++L      +L G+  +E+ N  KA LLYN ID S  FY   V  + RS MN+PF L                 ++QLKGH+SVGGMRAS+YNAMPLAGVE LVA+M++F+ + A
Sbjct:  235 ENQSMFNTPPTWGIYIAGLTFQWLKRQREGDLSGIAAMEQRNIAKARLLYNFIDQSQ-FYVNKVSPNARSRMNIPFFLRDETRNEAFLAGARERGLLQLKGHKSVGGMRASLYNAMPLAGVEALVAYMQEFEQRSA 369          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BAUCH (Phosphoserine aminotransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=serC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 65/131 (49.62%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYR--CPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            N S++NTPP +  Y+ GLVF++L   GGL E+EK NR KA LLYN ID S  +Y    PV    RS+MNVPF L  S L            +  LKGHR  GGMRA++YNAMPL GV+ LV FM +F  ++
Sbjct:  235 NKSMFNTPPTFAWYVSGLVFKWLKVQGGLVEIEKNNRAKAILLYNTIDNSEFYYNNILPVN---RSYMNVPFYLANSALDDLFIIEARNAGLYALKGHRVAGGMRAALYNAMPLEGVKTLVQFMHNFACRY 362          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LEPBP (Phosphoserine aminotransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=serC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 387
            ++N SLYNTPP Y IY+ GLVF+YL   GGL  +E+ N +KA+ LY+ ID S+ FY  PV    RS MNV F      L               LKG+R VGG RASIYNAMP  GV+ L++FMK+F+
Sbjct:  235 EKNGSLYNTPPTYSIYIAGLVFKYLKRKGGLAVMEETNERKAKKLYDAIDSSSLFY-APVPVPFRSAMNVVFRSHNDGLDSKFLSLAEEQGFAGLKGYREVGGFRASIYNAMPEEGVDALISFMKEFE 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LEPBA (Phosphoserine aminotransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=serC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 387
            ++N SLYNTPP Y IY+ GLVF+YL   GGL  +E+ N +KA+ LY+ ID S+ FY  PV    RS MNV F      L               LKG+R VGG RASIYNAMP  GV+ L++FMK+F+
Sbjct:  235 EKNGSLYNTPPTYSIYIAGLVFKYLKRKGGLAVMEETNERKAKKLYDAIDSSSLFY-APVPVPFRSAMNVVFRSHNDGLDSKFLSLAEEQGFAGLKGYREVGGFRASIYNAMPEEGVDALISFMKEFE 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BUCAP (Phosphoserine aminotransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=serC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 61/128 (47.66%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   13 NSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            NS++NTPP +  Y+ GLVF++L + GG+ ++E++N+KK+ LLY +ID SN FY   ++K  RS MNV F L  S L            +  LKGH  +GGMRASIYNAMPL GV+ L  FM  F+ K+
Sbjct:  234 NSMFNTPPTFSWYLSGLVFKWLKKQGGIKKIEQLNQKKSNLLYQIIDNSN-FYINDIDKRNRSQMNVVFHLYNSKLDNLFLKEAKNAGLNALKGHNVIGGMRASIYNAMPLEGVQSLAKFMLYFEKKY 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHESR (Phosphoserine aminotransferase OS=Shewanella sp. (strain MR-7) GN=serC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.649e-26
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            E++S++NTPP +  Y+   VF +L  LGG+  + K+N++KA++LY  ID +N FY+  V  + RS MNV F L    L            +V LKGHR VGGMRAS+YNAMPL GV  LV+FM +F AKH+
Sbjct:  234 EHDSMFNTPPTFAWYLAAEVFAWLKSLGGVASIAKINQQKAQMLYACID-ANPFYKNGVVAANRSQMNVTFQLADESLDGAFLKEAEAASLVALKGHRIVGGMRASLYNAMPLEGVAALVSFMNEFAAKHS 363          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_SHEB25.669e-2748.09Phosphoserine aminotransferase OS=Shewanella balti... [more]
SERC_RUTMC5.669e-2748.84Phosphoserine aminotransferase OS=Ruthia magnifica... [more]
SERC_PSEFS5.669e-2745.38Phosphoserine aminotransferase OS=Pseudomonas fluo... [more]
SERC_DESAA5.669e-2748.09Phosphoserine aminotransferase OS=Desulfatibacillu... [more]
SERC_ACIAC7.403e-2747.79Phosphoserine aminotransferase OS=Acidovorax avena... [more]
SERC_BAUCH9.669e-2749.62Phosphoserine aminotransferase OS=Baumannia cicade... [more]
SERC_LEPBP1.263e-2649.22Phosphoserine aminotransferase OS=Leptospira bifle... [more]
SERC_LEPBA1.263e-2649.22Phosphoserine aminotransferase OS=Leptospira bifle... [more]
SERC_BUCAP1.263e-2647.66Phosphoserine aminotransferase OS=Buchnera aphidic... [more]
SERC_SHESR1.649e-2647.33Phosphoserine aminotransferase OS=Shewanella sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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