CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BACC1 (Phosphoserine aminotransferase OS=Bacillus cereus (strain ATCC 10987) GN=serC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.471e-31
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            + +NNSLYNTPP + IY+  LV E+L E GG++ +E+ NR K+ LLYN +D S   +  PV+ + RS MN+PFT    +L            +V LKGHRSVGGMRASIYNAMP  GV++LV +MK+F+ ++
Sbjct:  229 YSKNNSLYNTPPSFSIYVTKLVLEWLKEQGGVSAIEEQNRMKSSLLYNFLDESK-LFTSPVDPTYRSLMNIPFTTPSEELNSEFLQKAKERGLVTLKGHRSVGGMRASIYNAMPAEGVQQLVNYMKEFELEN 359          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURP8 (Phosphoserine aminotransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=serC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.451e-31
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNS+YNTPP Y IY+ GLVF++L + GGL  +E  N +KA+LLY+ ID S+ FY   VE++ RS MNVPF L                 +VQLKGH+SVGGMRASIYNA+PL GV+ LV +M++F+ + A
Sbjct:  232 NNSMYNTPPTYAIYIAGLVFKWLKKQGGLTAIEARNVEKAKLLYDTID-SSSFYLNKVERNARSRMNVPFFLADESRNEDFLAGAKARGLVQLKGHKSVGGMRASIYNAVPLEGVKALVEYMREFEQRGA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURCJ (Phosphoserine aminotransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=serC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.451e-31
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +K++LLY+ ID S+ FY   VE + RS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  232 NNSLYNTPPTYAIYIAGLVFQWLKRQGGLEAIEARNIEKSKLLYDTIDASS-FYLNKVEPAARSRMNVPFFLADETRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFEQRDA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BACCZ (Phosphoserine aminotransferase OS=Bacillus cereus (strain ZK / E33L) GN=serC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.451e-31
Identity = 64/132 (48.48%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            + +NNSLYNTPP + IY+  LV E+L E GG++ +E+ N+ K+ LLYN +D S   +  PV+ + RS MN+PFT    +L            +V LKGHRSVGGMRASIYNAMP+ GV++LV +MK+F+ ++
Sbjct:  229 YSKNNSLYNTPPSFSIYVTKLVLEWLKEQGGVSAIEEQNKMKSSLLYNFLDESK-LFTSPVDPTYRSLMNIPFTTPSEELNNEFLQKAKERGLVTLKGHRSVGGMRASIYNAMPVQGVQQLVNYMKEFELEN 359          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_THIDA (Phosphoserine aminotransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=serC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.104e-30
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H +N S+YNTP  + +Y  GLVF++L   GGL  +EK+NR+KA LLY  +D ++ FY  PV K  RS MNVPFTL+ + L            ++QLKGHRSVGGMRASIYNAMP  GV+ LV ++  F+  H
Sbjct:  228 HADNESMYNTPATFAMYTAGLVFKWLKARGGLAGMEKINREKAALLYEALDATD-FYASPVAKDNRSLMNVPFTLKDAALDEAFLKGAKERGLLQLKGHRSVGGMRASIYNAMPTEGVKALVDYLHAFEKNH 358          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_STRMK (Phosphoserine aminotransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=serC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.104e-30
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H   +S+ NTPP +  Y+ GLVF+++L  GG+ E  K N  KA L+Y  IDGS GFYR  V  + RS MN+PF L  ++L            ++ LKGH+ VGG+RAS+YNAMPLAG E LVAFM DFQ +H
Sbjct:  229 HVARDSMLNTPPTWNWYLAGLVFKWMLAEGGVTEFAKRNAAKAALVYGAIDGSGGFYRNEVAYAARSRMNIPFFLPDAELDARFVAEAKAAGLLALKGHKVVGGIRASLYNAMPLAGAEALVAFMADFQQRH 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_RALSO (Phosphoserine aminotransferase OS=Ralstonia solanacearum GN=serC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.104e-30
Identity = 68/127 (53.54%), Postives = 84/127 (66.14%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 387
            EN S+YNTPP Y IY+ GLVF+++   GG+  +E  N  KA++LY+ ID S GFYR  +  S RS MNVPF L                 +VQLKGH+SVGGMRASIYNAMPL GVE LV FM++F+
Sbjct:  249 ENGSMYNTPPTYAIYVAGLVFQWIKRQGGVEALETRNIVKAKMLYDFIDAS-GFYRNDIHPSCRSRMNVPFFLNDESRNEAFLAQARAQGLVQLKGHKSVGGMRASIYNAMPLEGVEALVDFMREFE 374          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURPP (Phosphoserine aminotransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=serC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.104e-30
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            ENNS+YNTPP Y IY+ GLVF++L + GGL  +E  N +K++LLY+ +D S+ FY   VE+  RS MNVPF L                 MVQLKGH+SVGGMRASIYNA+PL GV+ LV +MK+F+ + A
Sbjct:  231 ENNSMYNTPPTYAIYIAGLVFKWLKKQGGLAAMEARNVEKSKLLYDAVDTSS-FYLNKVERGSRSRMNVPFFLADESRNEDFLAGAKARGMVQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKEFEQRSA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURCH (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain HI2424) GN=serC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.104e-30
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +K++LLY+ ID S+ FY   VE + RS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  232 NNSLYNTPPTYAIYIAGLVFQWLKRQGGLEAIEARNIEKSKLLYDTIDASS-FYLNKVEPAARSRMNVPFFLADETRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFEQRGA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURCC (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=serC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.104e-30
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +K++LLY+ ID S+ FY   VE + RS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  232 NNSLYNTPPTYAIYIAGLVFQWLKRQGGLEAIEARNIEKSKLLYDTIDASS-FYLNKVEPAARSRMNVPFFLADETRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFEQRGA 360          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_BACC16.471e-3149.24Phosphoserine aminotransferase OS=Bacillus cereus ... [more]
SERC_BURP88.451e-3152.31Phosphoserine aminotransferase OS=Burkholderia phy... [more]
SERC_BURCJ8.451e-3153.08Phosphoserine aminotransferase OS=Burkholderia cep... [more]
SERC_BACCZ8.451e-3148.48Phosphoserine aminotransferase OS=Bacillus cereus ... [more]
SERC_THIDA1.104e-3050.76Phosphoserine aminotransferase OS=Thiobacillus den... [more]
SERC_STRMK1.104e-3050.00Phosphoserine aminotransferase OS=Stenotrophomonas... [more]
SERC_RALSO1.104e-3053.54Phosphoserine aminotransferase OS=Ralstonia solana... [more]
SERC_BURPP1.104e-3052.67Phosphoserine aminotransferase OS=Burkholderia phy... [more]
SERC_BURCH1.104e-3053.08Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_BURCC1.104e-3053.08Phosphoserine aminotransferase OS=Burkholderia cen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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