CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_PORG3 (Phosphoserine aminotransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=serC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.229e-23
Identity = 57/134 (42.54%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTL--EKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H + +S++NTPP + +Y+     ++  ELGG+  +EKMN  KA L+Y+ ID S   +R  V    RS MN  F +  E  +L            MV +KGHRSVGG RAS+YNA+P+  V+ LV+ MK+F+AKH
Sbjct:  228 HIKKDSMFNTPPVFPVYVALQTMKWYKELGGVKVLEKMNLDKAALIYDAIDSSK-IFRGTVNPEDRSIMNACFVMKDEYKELEKEFATFAASRGMVGIKGHRSVGGFRASLYNALPIESVQSLVSVMKEFEAKH 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_STRTD (Phosphoserine aminotransferase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=serC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.911e-23
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLL-ELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSV-RSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 387
            E  SLYNTPPC+ IY+  LVF+++  E+GG++++ ++ R+K+ LLY+ I+ S+ FY  PV+ +  RS  N+PF     DL               +KGHRSVGGMRAS+YNA P  GV  L+ FMK F+
Sbjct:  233 EAGSLYNTPPCFNIYISKLVFDWVKNEIGGVDKMAEIQREKSGLLYDYIESSD-FYTNPVKDAKDRSVCNIPFVTPSKDLDAKFVAEADALGFKNIKGHRSVGGMRASVYNAFPRQGVLDLIDFMKKFE 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_STRT2 (Phosphoserine aminotransferase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=serC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.911e-23
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLL-ELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSV-RSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 387
            E  SLYNTPPC+ IY+  LVF+++  E+GG++++ ++ R+K+ LLY+ I+ S+ FY  PV+ +  RS  N+PF     DL               +KGHRSVGGMRAS+YNA P  GV  L+ FMK F+
Sbjct:  233 EAGSLYNTPPCFNIYISKLVFDWVKNEIGGVDKMAEIQREKSGLLYDYIESSD-FYTNPVKDAKDRSVCNIPFVTPSKDLDAKFVAEADALGFKNIKGHRSVGGMRASVYNAFPRQGVLDLIDFMKKFE 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_STRT1 (Phosphoserine aminotransferase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=serC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.911e-23
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLL-ELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSV-RSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 387
            E  SLYNTPPC+ IY+  LVF+++  E+GG++++ ++ R+K+ LLY+ I+ S+ FY  PV+ +  RS  N+PF     DL               +KGHRSVGGMRAS+YNA P  GV  L+ FMK F+
Sbjct:  233 EAGSLYNTPPCFNIYISKLVFDWVKNEIGGVDKMAEIQREKSGLLYDYIESSD-FYTNPVKDAKDRSVCNIPFVTPSKDLDAKFVAEADALGFKNIKGHRSVGGMRASVYNAFPRQGVLDLIDFMKKFE 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LEGPA (Phosphoserine aminotransferase OS=Legionella pneumophila (strain Paris) GN=serC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.471e-23
Identity = 56/128 (43.75%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 384
            H E+ SLY TPP +  Y+   +FE++   GG+  V + N  KA  LY  +D S  FY  PV K  RS MN+ F+L   DL            +  LKGHR  GG+RAS+YNAMP+AGV+ L+ FM +F
Sbjct:  231 HAEHRSLYATPPVFNCYLASKMFEWIKTQGGIEGVFQRNCLKAAKLYQYLD-STDFYLTPVSKEARSIMNICFSLCYPDLEQKFLDMANKRGLKALKGHRFTGGLRASLYNAMPMAGVDALIEFMSEF 357          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LACF3 (Phosphoserine aminotransferase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=serC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.445e-22
Identity = 57/127 (44.88%), Postives = 75/127 (59.06%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 387
            +  S  NTPP + IY   LV ++L E GG+  ++++NR+KA L+Y+ +D S  F    V    RS  N+PFT  K+DL            +V LKGHR VGGMRAS+YNAMPLAG   L  FM  F+
Sbjct:  229 KKESALNTPPVFQIYFANLVLKWLKEQGGVQAMDELNRQKAGLVYDYLDQSKLFSN-RVAPDSRSLTNIPFTTGKADLDQRFIKEAAAAGLVNLKGHRLVGGMRASLYNAMPLAGAVALRDFMHQFE 354          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LEGPL (Phosphoserine aminotransferase OS=Legionella pneumophila (strain Lens) GN=serC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 55/128 (42.97%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 384
            H E+ SLY TPP +  Y+   +FE++   GG+  + + N  KA  LY  +D S  FY  PV K  RS MN+ F+L   DL            +  LKGHR  GG+RAS+YNAMP+AGV+ L+ FM +F
Sbjct:  231 HAEHRSLYATPPVFNCYLASKMFEWIKTQGGIEGLFQRNCLKAAKLYQYLD-STDFYLTPVFKEARSIMNICFSLCYPDLEHKFLDMANERGLKALKGHRFTGGLRASLYNAMPMAGVDALIEFMSEF 357          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LEGPC (Phosphoserine aminotransferase OS=Legionella pneumophila (strain Corby) GN=serC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 384
            H E+ SLY TPP +  Y+   +FE++   GG+  + + N  KA  LY  +D S  FY  PV K  RS MN+ F+L   DL            +  LKGHR  GG+RAS+YNAMP+AGV+ L+ F+ +F
Sbjct:  231 HAEHRSLYATPPVFNCYLASKMFEWIKTQGGIEGLFQRNCLKAAKLYQYLD-STDFYLTPVSKEARSIMNICFSLCYPDLEQKFLYMANERGLKALKGHRFAGGLRASLYNAMPMAGVDALIEFLSEF 357          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_DICNV (Phosphoserine aminotransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=serC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.490e-22
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H + NSL NTPP + IY+  LV +++ + GG+     + +K++  LY+ ID +N FYR  VEK  RS +NV        L            +V LKGH +VGG+RAS+YNAM +AGVE L+ FM DF  +H
Sbjct:  228 HADANSLLNTPPTWQIYILHLVLKWIEQQGGVAHFAALAQKRSAKLYDFID-NNDFYRNDVEKKYRSKINVVMRTPSDALDTQFWQEAETHALVGLKGHSAVGGLRASLYNAMEMAGVEALIDFMHDFAQRH 358          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_COXBU (Phosphoserine aminotransferase OS=Coxiella burnetii GN=serC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.223e-21
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H +  S  NTPP +  Y+ GL+F+++   GG+  + + N++KA  LY  ID SN F+  P+  + RS MNV F L    L            +  LKGHR +GGMRASIYNAM   GV+ L+ FM  F+ +H
Sbjct:  229 HAKERSFINTPPTFAWYLAGLIFKWVKNQGGVAVLAERNQRKAAKLYKFIDKSN-FFDNPINPTYRSRMNVIFRLADERLNSLFLKEATENGLANLKGHRLLGGMRASIYNAMTEEGVDALINFMGQFEKRH 359          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_PORG32.229e-2342.54Phosphoserine aminotransferase OS=Porphyromonas gi... [more]
SERC_STRTD2.911e-2344.96Phosphoserine aminotransferase OS=Streptococcus th... [more]
SERC_STRT22.911e-2344.96Phosphoserine aminotransferase OS=Streptococcus th... [more]
SERC_STRT12.911e-2344.96Phosphoserine aminotransferase OS=Streptococcus th... [more]
SERC_LEGPA8.471e-2343.75Phosphoserine aminotransferase OS=Legionella pneum... [more]
SERC_LACF31.445e-2244.88Phosphoserine aminotransferase OS=Lactobacillus fe... [more]
SERC_LEGPL4.204e-2242.97Phosphoserine aminotransferase OS=Legionella pneum... [more]
SERC_LEGPC4.204e-2242.19Phosphoserine aminotransferase OS=Legionella pneum... [more]
SERC_DICNV5.490e-2242.42Phosphoserine aminotransferase OS=Dichelobacter no... [more]
SERC_COXBU1.223e-2140.91Phosphoserine aminotransferase OS=Coxiella burneti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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