CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_FLAJ1 (Phosphoserine aminotransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=serC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 393
            H +  S+YNTP  + +Y+  L  +++   GG+  VEK+N  KA+LLY  ID  N  ++       RS MNV F L   +             +  L GHRSVGG RASIYNAMP+  V+ LV  MK  ++K
Sbjct:  226 HIKAESMYNTPSVFAVYVSLLTLQWIKAKGGIAAVEKLNNAKADLLYAEID-RNPLFKGAANVEDRSKMNVTFLLNNPEHTETFDALWKAAGISGLPGHRSVGGYRASIYNAMPIESVQVLVDVMKALESK 355          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_EXISA (Phosphoserine aminotransferase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=serC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 45/125 (36.00%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   13 NSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 387
            ++L+NTP  + +Y    V +++ + GG+  +E++NR+K++ +Y+ ++ S  F    V    RS  N+PF+    +L            +++L GHRSVGG+RAS+YNAMPL G E+LV  M+ F+
Sbjct:  223 DTLFNTPSTFSMYAAERVLKWVEDCGGVEAMERLNRQKSDRIYSYLEESTCFSPI-VTGERRSLTNIPFSTGNQELDQRFERYALERGLLELGGHRSVGGLRASLYNAMPLEGAERLVDVMRAFE 346          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BACTN (Phosphoserine aminotransferase OS=Bacteroides thetaiotaomicron GN=serC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.399e-17
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTL--EKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H +N S++NTPP   IY   L   ++   GG+ E+E+   +KA++LY  ID  N  +     K  RS MN+ F +  E  DL            MV +KGHRSVGG RAS YNA+P   V+ L+  M++F+  H
Sbjct:  223 HIDNGSMFNTPPVVPIYAALLNLRWIKAQGGVKEMERRAIEKADMLYAEID-RNKLFVGTAAKEDRSRMNICFVMAPEYKDLEADFMKFATEKGMVGIKGHRSVGGFRASCYNALPKESVQALIDCMQEFEKLH 355          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BACFR (Phosphoserine aminotransferase OS=Bacteroides fragilis GN=serC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTL--EKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H +  S++NTPP   IY       ++   GG+ E+++   +KA++LY  ID  N  +     K  RS MN+ F +  E  DL            M  +KGHRSVGG RAS YNAMP   V+ L+  M++F+  H
Sbjct:  223 HIDGGSMFNTPPVLPIYSAMQTLRWIKAQGGVKEMDRRATEKADMLYAEID-RNKMFVGTAAKEDRSRMNICFVMAPEYKDLEADFLKFATDKGMSGIKGHRSVGGFRASCYNAMPKESVQALIDCMQEFEKLH 355          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BACFN (Phosphoserine aminotransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=serC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTL--EKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H +  S++NTPP   IY       ++   GG+ E+++   +KA++LY  ID  N  +     K  RS MN+ F +  E  DL            M  +KGHRSVGG RAS YNAMP   V+ L+  M++F+  H
Sbjct:  223 HIDGGSMFNTPPVLPIYSAMQTLRWIKAQGGVKEMDRRATEKADMLYAEID-RNKMFVGTAAKEDRSRMNICFVMAPEYKDLEADFLKFATDKGMSGIKGHRSVGGFRASCYNAMPKESVQALIDCMQEFEKLH 355          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_FLAJ12.820e-1839.69Phosphoserine aminotransferase OS=Flavobacterium j... [more]
SERC_EXISA2.820e-1836.00Phosphoserine aminotransferase OS=Exiguobacterium ... [more]
SERC_BACTN1.399e-1738.81Phosphoserine aminotransferase OS=Bacteroides thet... [more]
SERC_BACFR3.447e-1636.57Phosphoserine aminotransferase OS=Bacteroides frag... [more]
SERC_BACFN3.447e-1636.57Phosphoserine aminotransferase OS=Bacteroides frag... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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