CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_BURCA (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=serC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.104e-30
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            NNSLYNTPP Y IY+ GLVF++L   GGL  +E  N +K++LLY+ ID S+ FY   VE + RS MNVPF L                 ++QLKGH+SVGGMRASIYNA+PL GV+ LV +MKDF+ + A
Sbjct:  232 NNSLYNTPPTYAIYIAGLVFQWLKRQGGLEAIEARNIEKSKLLYDTIDASS-FYLNKVEPAARSRMNVPFFLADETRNEDFLAGAKARGLLQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKDFEQRGA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_STRM5 (Phosphoserine aminotransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=serC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.442e-30
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 HDENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            H   +S+ NTPP +  Y+ GLVF+++L  GG+ E  K N  KA L+Y  IDGS GFYR  V  + RS MN+PF L  ++L            ++ LKGH+ VGG+RAS+YNAMPLAG E LVAFM DFQ +H
Sbjct:  229 HVARDSMLNTPPTWNWYLAGLVFKWMLAEGGVAEFAKRNAAKAALVYGAIDGSGGFYRNEVAHAARSRMNIPFFLPDAELDARFVAEAKAAGLLALKGHKVVGGIRASLYNAMPLAGAEALVAFMADFQQRH 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_MOUSE (Phosphoserine aminotransferase OS=Mus musculus GN=Psat1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.442e-30
Identity = 66/133 (49.62%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   10 NNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTL--EKSD--LXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            NNSLYNTPPC+ IY+ G+V E++   GG   +EK++  K++++Y +ID S GFY CPVE+  RS MN+PF +   K D  L            M+ LKGHRSVGG+RAS+YNA+    VEKL AFMK+F   H
Sbjct:  236 NNSLYNTPPCFSIYVMGMVLEWIKNNGGAAAMEKLSSIKSQMIYEIIDNSQGFYVCPVERQNRSRMNIPFRIGNAKGDEALEKRFLDKAVELNMISLKGHRSVGGIRASLYNAVTTEDVEKLAAFMKNFLEMH 368          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LISMF (Phosphoserine aminotransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=serC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.442e-30
Identity = 66/126 (52.38%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 384
            EN+S+YNTPP + IY+  LVFE++ E GG+  +E +NRKKA LLYN ID S+ F+  PVE S RS  NVPF    ++                LKGHRSVGGMRAS+YNA P+ GVE L+AFM+ F
Sbjct:  228 ENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYNYIDQSD-FFSSPVEPSARSLTNVPFVTNSAEFDKAFVQEAEANGFKNLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKF 352          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_KLEP7 (Phosphoserine aminotransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=serC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.442e-30
Identity = 69/130 (53.08%), Postives = 89/130 (68.46%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            EN+S++NTPP +  Y+ GLVF++L + GG+  ++K+N++KAELLY VID S GFYR  V ++ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM DF+ +H
Sbjct:  233 ENDSMFNTPPTFAWYLAGLVFKWLKQQGGVAAMDKINQQKAELLYGVIDNS-GFYRNDVAQANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLDGVKTLTDFMLDFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_KLEP3 (Phosphoserine aminotransferase OS=Klebsiella pneumoniae (strain 342) GN=serC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.442e-30
Identity = 69/130 (53.08%), Postives = 89/130 (68.46%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            EN+S++NTPP +  Y+ GLVF++L + GG+  ++K+N++KAELLY VID S GFYR  V ++ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM DF+ +H
Sbjct:  233 ENDSMFNTPPTFAWYLAGLVFKWLKQQGGVAAMDKINQQKAELLYGVIDNS-GFYRNDVAQANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLDGVKALTDFMLDFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_PHOPR (Phosphoserine aminotransferase OS=Photobacterium profundum GN=serC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.883e-30
Identity = 68/131 (51.91%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            +  S++NTPP +  Y+ G VF++L ELGGL  +++ N  KAELLYN IDGSN FY   V    RSFMN PF L+K +L            +  LKGHR VGGMRASIYNAMP+ GV+ LV FM+ F+ K+A
Sbjct:  231 DKESMFNTPPTFAWYLAGEVFKWLKELGGLEAMKQRNDAKAELLYNFIDGSN-FYNNDVHVDNRSFMNAPFQLKKPELDSKFLEQADAAGLKALKGHRVVGGMRASIYNAMPIEGVQALVDFMRQFEQKNA 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ERWCT (Phosphoserine aminotransferase OS=Erwinia carotovora subsp. atroseptica GN=serC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.459e-30
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +N+S++NTPP +  Y+ G+VF++L E GGL E+EK N++KA+LLY+ IDG N FYR  V  + RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM DF  +H
Sbjct:  232 DNDSMFNTPPTFAWYLSGMVFKWLKEHGGLAEMEKRNQEKADLLYSAIDG-NDFYRNDVALANRSRMNVPFLLADSALDKVFLEESVAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTEFMADFARRH 360          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_PSEMY (Phosphoserine aminotransferase OS=Pseudomonas mendocina (strain ymp) GN=serC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.211e-30
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 399
            +N S+YNTP  Y  Y+ GLVF++L E GG+  +E++NR K +LLY  IDGS+ FY  P+  + RS+MNVPF L    L            ++ LKGHRSVGGMRASIYNA+ L  VE LVA+M +F+ +HA
Sbjct:  232 DNGSMYNTPATYSWYLSGLVFQWLKEQGGVEAMERINRAKKDLLYKAIDGSD-FYSNPIAHNARSWMNVPFRLADEKLDKAFLAGADERGLLNLKGHRSVGGMRASIYNAVGLDAVEALVAYMAEFEKEHA 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_JANMA (Phosphoserine aminotransferase OS=Janthinobacterium sp. (strain Marseille) GN=serC PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.211e-30
Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            DE++S++NTPP Y IY+ GL F+++L  GG+  +E++N  KA+L+Y+ +D S  FY   V  + RS MNVPF L+   L            +VQLKGH SVGGMRASIYNAMP+ GV+ LVAFMKDF+ K+
Sbjct:  233 DEHDSMFNTPPTYPIYIAGLTFQWMLRQGGVAAMEQVNIAKAKLIYDYLD-STDFYVNSVPAANRSRMNVPFFLKDESLNGKFITEADAQGLVQLKGHSSVGGMRASIYNAMPIEGVQALVAFMKDFEKKY 362          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_BURCA1.104e-3053.08Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_STRM51.442e-3050.00Phosphoserine aminotransferase OS=Stenotrophomonas... [more]
SERC_MOUSE1.442e-3049.62Phosphoserine aminotransferase OS=Mus musculus GN=... [more]
SERC_LISMF1.442e-3052.38Phosphoserine aminotransferase OS=Listeria monocyt... [more]
SERC_KLEP71.442e-3053.08Phosphoserine aminotransferase OS=Klebsiella pneum... [more]
SERC_KLEP31.442e-3053.08Phosphoserine aminotransferase OS=Klebsiella pneum... [more]
SERC_PHOPR1.883e-3051.91Phosphoserine aminotransferase OS=Photobacterium p... [more]
SERC_ERWCT2.459e-3053.08Phosphoserine aminotransferase OS=Erwinia carotovo... [more]
SERC_PSEMY3.211e-3050.38Phosphoserine aminotransferase OS=Pseudomonas mend... [more]
SERC_JANMA3.211e-3051.15Phosphoserine aminotransferase OS=Janthinobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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