CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_LISMO (Phosphoserine aminotransferase OS=Listeria monocytogenes GN=serC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.478e-30
Identity = 65/126 (51.59%), Postives = 83/126 (65.87%), Query Frame = 1 
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDF 384
            EN+S+YNTPP + IY+  LVFE++ E GG+  +E +NRKKA LLY+ ID S+ F+  PVE S RS  NVPF    ++                LKGHRSVGGMRAS+YNA P+ GVE L+AFM+ F
Sbjct:  228 ENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSD-FFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKF 352
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_CITK8 (Phosphoserine aminotransferase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=serC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.478e-30
Identity = 69/131 (52.67%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N+S++NTPP +  Y+ GLVF++L   GG+  + K+N++KAELLY VID S+ FYR  V KS RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM DF+ +H
Sbjct:  232 NDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMNKINQQKAELLYGVIDNSD-FYRNDVAKSNRSRMNVPFQLADSALDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVDFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_YERPG (Phosphoserine aminotransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +N+S++NTPP +  Y+ GLVF++L E GGL E+EK N+ KAELLY  ID + GFYR  V  + RS+MNVPF +  + L            +  LKGHR  GGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  232 DNDSMFNTPPTFAWYLSGLVFKWLKEQGGLGEMEKRNQAKAELLYGAIDRT-GFYRNQVAITNRSWMNVPFQMADASLDKLFLSEAEAQGLQALKGHRVAGGMRASIYNAMPIEGVKALTDFMADFERRH 360
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_YERPE (Phosphoserine aminotransferase OS=Yersinia pestis GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +N+S++NTPP +  Y+ GLVF++L E GGL E+EK N+ KAELLY  ID + GFYR  V  + RS+MNVPF +  + L            +  LKGHR  GGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  232 DNDSMFNTPPTFAWYLSGLVFKWLKEQGGLGEMEKRNQAKAELLYGAIDRT-GFYRNQVAITNRSWMNVPFQMADASLDKLFLSEAEAQGLQALKGHRVAGGMRASIYNAMPIEGVKALTDFMADFERRH 360
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_YERPA (Phosphoserine aminotransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    7 ENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +N+S++NTPP +  Y+ GLVF++L E GGL E+EK N+ KAELLY  ID + GFYR  V  + RS+MNVPF +  + L            +  LKGHR  GGMRASIYNAMP+ GV+ L  FM DF+ +H
Sbjct:  232 DNDSMFNTPPTFAWYLSGLVFKWLKEQGGLGEMEKRNQAKAELLYGAIDRT-GFYRNQVAITNRSWMNVPFQMADASLDKLFLSEAEAQGLQALKGHRVAGGMRASIYNAMPIEGVKALTDFMADFERRH 360
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHISS (Phosphoserine aminotransferase OS=Shigella sonnei (strain Ss046) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHIFL (Phosphoserine aminotransferase OS=Shigella flexneri GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHIDS (Phosphoserine aminotransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHIBS (Phosphoserine aminotransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361
[Close]
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_SHIB3 (Phosphoserine aminotransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_LISMO5.478e-3051.59Phosphoserine aminotransferase OS=Listeria monocyt... [more]
SERC_CITK85.478e-3052.67Phosphoserine aminotransferase OS=Citrobacter kose... [more]
SERC_YERPG7.154e-3050.77Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERPE7.154e-3050.77Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_YERPA7.154e-3050.77Phosphoserine aminotransferase OS=Yersinia pestis ... [more]
SERC_SHISS7.154e-3051.91Phosphoserine aminotransferase OS=Shigella sonnei ... [more]
SERC_SHIFL7.154e-3051.91Phosphoserine aminotransferase OS=Shigella flexner... [more]
SERC_SHIDS7.154e-3051.91Phosphoserine aminotransferase OS=Shigella dysente... [more]
SERC_SHIBS7.154e-3051.91Phosphoserine aminotransferase OS=Shigella boydii ... [more]
SERC_SHIB37.154e-3051.91Phosphoserine aminotransferase OS=Shigella boydii ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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