CF504108

Overview
NameCF504108
Unique NameCF504108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3685 contig Csv1_Contig3685:811..1228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_PASMU (Phosphoserine aminotransferase OS=Pasteurella multocida GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 64/128 (50.00%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   13 NSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            +S+ NTPP +  Y+C LVF++LL LGG+ E+EK N+ KA+LLY+ ++ S  FYR PV K  RS MNV FT +  +L            +  LKGH+ +GGMRASIYNAMP+ GV+ L+AFMK F+A++
Sbjct:  233 DSMINTPPTFAWYLCALVFKHLLSLGGIEEIEKRNQAKAQLLYDYLE-STPFYRNPVAKVNRSRMNVTFTTDNDELNAKFVAEATAAGLHALKGHKVLGGMRASIYNAMPMEGVQALIAFMKQFEAEN 359          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECOSM (Phosphoserine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECOSE (Phosphoserine aminotransferase OS=Escherichia coli (strain SE11) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECOLI (Phosphoserine aminotransferase OS=Escherichia coli (strain K12) GN=serC PE=1 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECOLC (Phosphoserine aminotransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECOHS (Phosphoserine aminotransferase OS=Escherichia coli O9:H4 (strain HS) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECODH (Phosphoserine aminotransferase OS=Escherichia coli (strain K12 / DH10B) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECOBW (Phosphoserine aminotransferase OS=Escherichia coli (strain K12 / BW2952) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECO8A (Phosphoserine aminotransferase OS=Escherichia coli O8 (strain IAI1) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
BLAST of CF504108 vs. ExPASy Swiss-Prot
Match: SERC_ECO5E (Phosphoserine aminotransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=serC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    4 DENNSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYRCPVEKSVRSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 396
            ++N S++NTPP +  Y+ GLVF++L   GG+ E++K+N++KAELLY VID S+ FYR  V K+ RS MNVPF L  S L            +  LKGHR VGGMRASIYNAMPL GV+ L  FM +F+ +H
Sbjct:  232 NDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 361          
The following BLAST results are available for this feature:
BLAST of CF504108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_PASMU7.154e-3050.00Phosphoserine aminotransferase OS=Pasteurella mult... [more]
SERC_ECOSM7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOSE7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOLI7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOLC7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOHS7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECODH7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECOBW7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO8A7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]
SERC_ECO5E7.154e-3051.91Phosphoserine aminotransferase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-596 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504108 ID=CF504108; Name=CF504108; organism=Citrus sinensis; type=EST; length=418bp
CACGATGAAAACAATTCACTTTACAATACACCGCCTTGTTATTGTATCTA
CATGTGTGGATTAGTTTTTGAGTATTTGCTAGAATTGGGTGGGTTGAATG
AAGTTGAGAAGATGAACAGGAAGAAGGCTGAATTGTTATACAACGTCATT
GACGGAAGCAACGGGTTCTATAGATGCCCAGTTGAGAAATCTGTGAGGTC
ATTCATGAATGTGCCGTTTACTCTGGAGAAGTCTGATTTGGAAGCTGAGT
TTGTGAAGGAAGCTGCTAAGGAGAAGATGGTGCAATTGAAGGGGCATAGG
TCAGTTGGAGGAATGAGGGCTTCAATATATAATGCTATGCCTTTGGCTGG
CGTTGAGAAGTTGGTTGCTTTCATGAAGGATTTCCAGGCAAAGCATGCTT
GATTTTTGCTTTAGTGTT
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