CF504110

Overview
NameCF504110
Unique NameCF504110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD 345
            Y+G+R+RKWGK+V+EIR PN R+R+WLGSY T   AARA+D A+F LRG SA+ NFPD
Sbjct:   31 YRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPD 88          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  148 PAEGSDSR----YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 342
            P+ GS S+    Y+GVR+R WGK+V+EIRLP +R R+WLG++DTAE+AA A+D A F LRG SA+ NFP
Sbjct:  131 PSSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.773e-17
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  121 KMVKHAVEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPL------RSQSPEQSVSE 465
            K  K   ++        ++GVR R+WGK+VSEIR P  ++RIWLG++ TAE AARA D A   ++G SA  NFP+    +    S  P +IQA AA  A +  +       S SP  +V+E
Sbjct:   28 KRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPSPSPTVTE 148          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.015e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  160 SDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAA 408
            SD  Y+GVR R WGK+VSEIR P  ++RIWLG++ T E AARA DAA   ++G SA  NFP+    +    S  P ++QA AA
Sbjct:   39 SDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAA 121          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.015e-16
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPP 354
            +KG+R RKWGK+V+EIR PN R+R+WLGSY T E AARA+D A+F LRG +A  NFP+  P
Sbjct:   21 FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELLP 81          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 348
            Y+GVR+R+WGK+V+EIR P SRAR+WLG++DTAE+AA A+D   F LRG SA  NFP++
Sbjct:  143 YRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPEH 201          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPD---ISGGRSLKP------SEIQAVAAQFANSEPLRSQSPEQSVSELQTEY 480
            Y+GVR+R WGK+V+EIRLP +R R+WLG++DTAE+AA A+D A + LRG  A+ NFP    +     GG    P      +++Q +      +E +     E  +   +TEY
Sbjct:   93 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGGSCFNPLHSSVDAKLQEICQSLRKTEDIDLPCSETELFPPKTEY 204          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.954e-16
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   61 VNSIQHHSSKSRIPIT*SPLK-MVKHAVEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 348
            ++S    SS +R+  + +P++  +  A  + A     RY+GVR+R WGK+ +EIR P+  AR+WLG++DTAE AARA+D A    RG  AK NFP++
Sbjct:   39 IDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPED 135          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.858e-16
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  127 VKHAVEKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 342
            VK A  K  EG+  RY+GVRKR WG+Y +EIR P  ++R+WLG++DT E+AARA+D      RG  AK NFP
Sbjct:    5 VKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.858e-16
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD--NPPDISG 366
            Y+GVR+R WGK+V+EIRLP +R R+WLG+YDTAE AA A+D A + LRG  A+ NFP+  +P ++ G
Sbjct:  136 YRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSELLG 202          
The following BLAST results are available for this feature:
BLAST of CF504110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RAP21_ARATH4.557e-1765.52Ethylene-responsive transcription factor RAP2-1 OS... [more]
ERF55_ARATH4.557e-1759.42Ethylene-responsive transcription factor ERF055 OS... [more]
ERF38_ARATH7.773e-1739.67Ethylene-responsive transcription factor ERF038 OS... [more]
ERF37_ARATH1.015e-1650.60Ethylene-responsive transcription factor ERF037 OS... [more]
ERF11_ARATH1.015e-1662.30Ethylene-responsive transcription factor ERF011 OS... [more]
ERF54_ARATH1.732e-1662.71Ethylene-responsive transcription factor ERF054 OS... [more]
ERF60_ARATH2.262e-1639.29Ethylene-responsive transcription factor ERF060 OS... [more]
EF110_ARATH2.954e-1643.30Ethylene-responsive transcription factor ERF110 OS... [more]
ERF76_ARATH3.858e-1654.17Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF61_ARATH3.858e-1656.72Ethylene-responsive transcription factor ERF061 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-598 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504110 ID=CF504110; Name=CF504110; organism=Citrus sinensis; type=EST; length=481bp
CAAAATAAAAGCAAACAGGAATACGAGAATCATCATCCAAATCACACTCA
ATAGTTCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCAAGAATAC
CCATAACCTGAAGCCCTTTAAAAATGGTGAAGCACGCAGTCGAAAAGCCT
GCTGAAGGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGG
GAAATATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGTATCTGGC
TGGGCTCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCT
TTGTTTTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGGACAACCC
ACCCGACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATTCAAGCTG
TGGCGGCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATCACCAGAA
CAGTCGGTGTCCGAATTGCAAACGGAGTACT
back to top