CF504110

Overview
NameCF504110
Unique NameCF504110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.039e-16
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANS 423
            Y+GVR R WGK+VSEIR P  ++RIWLG+Y TAE AARA D A   ++G S   NFP+    +    S  P +IQA A + A +
Sbjct:   71 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAEA 154          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   76 HHSSKSRIPIT*SPLKMVKHAVEKPAEGSDS-----RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 348
            H   +    +   PL +   AV K  E S S     +Y+GVR+R WGK+ +EIR P+   R+WLG+++TAE AARA+DAA    RG  AK NFP+N
Sbjct:   25 HKREREEFSLPPQPL-ITGSAVTKECESSMSLERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPEN 119          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.122e-15
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA 417
            Y+G R R WGK+VSEIR P  ++RIWLG++ TAE AARA D A   ++G SA  NFP+    +    SL   +IQA AA+ A
Sbjct:   26 YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAA 107          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.122e-15
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  154 EGSDSR---YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 348
            E S+SR   Y+GVR+R WGK+ +EIR PN  AR+WLG++DTAE+AA A+D A F  RG  AK NFP++
Sbjct:   61 EKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEH 128          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.466e-15
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  166 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP-DNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSEL 468
            ++Y+G+R+R WGK+ +EIR P   ARIWLG++ TAE+AARA+DAA   +RG  AK NFP +N    S  RS+K +  + VA    N  P   Q+   S   +
Sbjct:  123 NQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNPSPALVQNSNISFENM 224          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.466e-15
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  142 EKPAEGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA 417
            EK        Y+GVR R WGK+VSEIR P  ++RIWLG++ TAE A RA D A   ++G SA  NFP+    +    SL P +++A A + A
Sbjct:    9 EKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAA 100          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.466e-15
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAA 408
            Y+GVR R WGK+VSEIR P  ++RIWLG+Y TAE AARA D A   ++G +A  NFP    ++    +  P +IQA A+
Sbjct:  100 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAAS 178          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF20_ARATH (Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.466e-15
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  154 EGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA----KFNFPDNPPDISGGRSLKPSEIQAVAA 408
            E   S+YKG+R+RKWGK+VSEIR+P +R R+WLGS+ TAE AA A D A +CL   S+     FNFP +    S   ++ P  IQ  A+
Sbjct:    8 ETDQSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRPSSLDDESFNFP-HLLTTSLASNISPKSIQKAAS 95          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD 345
            Y+GVR+R WGK+V+EIRLP +R R+WLG++DTAE+AA A+D A + LRG  A+ NFP+
Sbjct:  152 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN 209          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.915e-15
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  166 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD--NPPDISGGR-SLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEY 480
            ++Y+G+R+R WGK+ +EIR P   +R WLG++DTAE+AARA+DAA   +RG  AK NFP+  NP  +S  R S K + +Q   A     +P +S +  Q  + L  +Y
Sbjct:  126 NQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVA-----KPNKSVTLVQQPTHLSQQY 228          
The following BLAST results are available for this feature:
BLAST of CF504110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
ERF35_ARATH5.039e-1648.81Ethylene-responsive transcription factor ERF035 OS... [more]
RAP26_ARATH8.595e-1644.79Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF42_ARATH1.122e-1550.00Ethylene-responsive transcription factor ERF042 OS... [more]
EF112_ARATH1.122e-1557.35Ethylene-responsive transcription factor ERF112 OS... [more]
RA212_ARATH1.466e-1544.12Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF43_ARATH1.466e-1544.57Ethylene-responsive transcription factor ERF043 OS... [more]
ERF34_ARATH1.466e-1549.37Ethylene-responsive transcription factor ERF034 OS... [more]
ERF20_ARATH1.466e-1548.31Ethylene-responsive transcription factor ERF020 OS... [more]
RAP24_ARATH1.915e-1560.34Ethylene-responsive transcription factor RAP2-4 OS... [more]
RAP22_ARATH1.915e-1542.59Ethylene-responsive transcription factor RAP2-2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-598 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504110 ID=CF504110; Name=CF504110; organism=Citrus sinensis; type=EST; length=481bp
CAAAATAAAAGCAAACAGGAATACGAGAATCATCATCCAAATCACACTCA
ATAGTTCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCAAGAATAC
CCATAACCTGAAGCCCTTTAAAAATGGTGAAGCACGCAGTCGAAAAGCCT
GCTGAAGGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGG
GAAATATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGTATCTGGC
TGGGCTCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCT
TTGTTTTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGGACAACCC
ACCCGACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATTCAAGCTG
TGGCGGCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATCACCAGAA
CAGTCGGTGTCCGAATTGCAAACGGAGTACT
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