CF504110

Overview
NameCF504110
Unique NameCF504110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  169 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 342
            R++GVRKR WG++ +EIR P  + R+WLG++D+AE AARA+DAA   LRG  AK NFP
Sbjct:   27 RFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.716e-14
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    4 NKSKQEYENHH----PNHTQ*FRVNSIQHHSSKSRIPIT*SPLKMVKHAVEKP--AEGSDSRYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 342
            N SK E+++      PN +   R +S++  S K R P     + + +  V+K   A      Y+GVR+R WGK+ +EIR PN +  R+WLG++DTA +AA+A+D A + LRG  A  NFP
Sbjct:   77 NNSKTEFDSFEFGTIPNVSA-ARSSSLKQTSFKERKPSLNIAIPVKQEVVQKVELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.716e-14
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 342
            Y+GVRKR WG+Y +EIR P  ++R+WLG++DTAE+AA+A+D A    RG  AK NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.716e-14
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 342
            Y+GVRKR WG+Y +EIR P  ++R+WLG++DTAE+AA+A+D A    RG  AK NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.159e-14
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  169 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 342
            +++GVR+R+WG +VSEIR P  + R+WLG++DTAE AARA+D A   + G+SAK NFP
Sbjct:    6 KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFP 63          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.159e-14
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  169 RYKGVRKRKWGKYVSEIRLPNSR-ARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQT 474
            +Y+GVR+R WGK+ +EIR P    AR+WLG+Y+T E AA A+D A F LRG  AK NF    P + G    +P  I+            R +SPE SVS+  T
Sbjct:   91 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNF----PHLIGSCKYEPVRIRP-----------RRRSPEPSVSDQLT 178          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.159e-14
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  172 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 342
            ++GVRKR WG+Y +EIR P  + R+WLG++DTAE+AARA+D A    RG  AK NFP
Sbjct:   33 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.159e-14
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  169 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVA 405
            +++GVR+R WGK+ +EIR P+ R R+WLG++DTAE+AA  +D A   LRG +A+ NFP  PP ++       +E++ V+
Sbjct:   86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP--PPPVTENVEEASTEVKGVS 162          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.044e-14
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  169 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNF 339
            RY+GVRKR WG+Y +EIR P  + R+WLG++DTA++AARA+DAA    RG  AK NF
Sbjct:   30 RYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CF504110 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 8.044e-14
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  154 EGSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVS 462
            + S  RY+GVR+R WGK+V+EIR P  R R WLG++ TAE AARA+D A   L G  A+ N   + P      S   S   + +   ++++ LR   P  + +
Sbjct:   49 DNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPSSPSSVSSSSSSVSAASSPSTSSSSTQTLRPLLPRPAAA 151          
The following BLAST results are available for this feature:
BLAST of CF504110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
ERF3_TOBAC3.611e-1458.62Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF5_NICSY4.716e-1439.17Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF4_TOBAC4.716e-1457.89Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY4.716e-1457.89Ethylene-responsive transcription factor 4 OS=Nico... [more]
SHN3_ARATH6.159e-1456.90Ethylene-responsive transcription factor SHINE 3 O... [more]
ERF99_ARATH6.159e-1443.69Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF80_ARATH6.159e-1457.89Ethylene-responsive transcription factor 9 OS=Arab... [more]
CRF1_ARATH6.159e-1444.30Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF79_ARATH8.044e-1459.65Ethylene-responsive transcription factor 8 OS=Arab... [more]
ABI4_ARATH8.044e-1437.86Ethylene-responsive transcription factor ABI4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-598 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504110 ID=CF504110; Name=CF504110; organism=Citrus sinensis; type=EST; length=481bp
CAAAATAAAAGCAAACAGGAATACGAGAATCATCATCCAAATCACACTCA
ATAGTTCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCAAGAATAC
CCATAACCTGAAGCCCTTTAAAAATGGTGAAGCACGCAGTCGAAAAGCCT
GCTGAAGGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGG
GAAATATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGTATCTGGC
TGGGCTCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCT
TTGTTTTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGGACAACCC
ACCCGACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATTCAAGCTG
TGGCGGCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATCACCAGAA
CAGTCGGTGTCCGAATTGCAAACGGAGTACT
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