CF504111
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.756e-28 Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILH+QGGQCGNQIGSKFWEVICDEHGVDPTGKY GD Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGD 39 HSP 2 Score: 46.2098 bits (108), Expect = 3.756e-28 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 55 EASGGRYVPRAVLMDLEPGTM 75 HSP 3 Score: 30.8018 bits (68), Expect = 3.756e-28 Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1 Query: 121 PRGSIEVTGVEDLQLERINVYYNRS 195 P G G D+QLERI+VYYN + Sbjct: 32 PTGKYNGDGSSDIQLERIDVYYNEA 56
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.333e-27 Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILH+QGGQCGNQIGSKFWEVICDEHGVDPTG+Y GD Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD 39 HSP 2 Score: 46.2098 bits (108), Expect = 2.333e-27 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 54 EASGGRYVPRAVLMDLEPGTM 74 HSP 3 Score: 29.261 bits (64), Expect = 2.333e-27 Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1 Query: 154 DLQLERINVYYNRS 195 DLQLERINVYYN + Sbjct: 42 DLQLERINVYYNEA 55
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.027e-27 Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTG+Y+G Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKG 38 HSP 2 Score: 46.2098 bits (108), Expect = 3.027e-27 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 56 EASGGRYVPRAVLMDLEPGTM 76 HSP 3 Score: 30.0314 bits (66), Expect = 3.027e-27 Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1 Query: 121 PRGSIEVTGVE-DLQLERINVYYNRS 195 P G + T E DLQLERINVY+N + Sbjct: 32 PTGRYKGTAAESDLQLERINVYFNEA 57
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.027e-27 Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTG+Y+G Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKG 38 HSP 2 Score: 46.2098 bits (108), Expect = 3.027e-27 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 56 EASGGRYVPRAVLMDLEPGTM 76 HSP 3 Score: 30.0314 bits (66), Expect = 3.027e-27 Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1 Query: 121 PRGSIEVTGVE-DLQLERINVYYNRS 195 P G + T E DLQLERINVY+N + Sbjct: 32 PTGRYKGTAAESDLQLERINVYFNEA 57
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.593e-27 Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEVICDEHGVD TGKY GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDNTGKYNGD 39 HSP 2 Score: 46.2098 bits (108), Expect = 8.593e-27 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 53 EASGGRYVPRAVLMDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 8.593e-27 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.115e-26 Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD 39 HSP 2 Score: 46.2098 bits (108), Expect = 1.115e-26 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 53 EASGGRYVPRAVLMDLEPGTM 73 HSP 3 Score: 30.8018 bits (68), Expect = 1.115e-26 Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 142 TGVEDLQLERINVYYNRS 195 +G DLQLERINVYYN + Sbjct: 37 SGDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB7_ORYSJ (Tubulin beta-7 chain OS=Oryza sativa subsp. japonica GN=TUBB7 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.879e-26 Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEVICDEHGVD TG+Y GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGD 39 HSP 2 Score: 46.2098 bits (108), Expect = 1.879e-26 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 53 EASGGRYVPRAVLMDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 1.879e-26 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.437e-26 Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIGSKFWEVICDEHG+D TG+Y GD Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD 39 HSP 2 Score: 46.2098 bits (108), Expect = 2.437e-26 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGRYVPRAVLMDLEPGTM Sbjct: 54 EASGGRYVPRAVLMDLEPGTM 74 HSP 3 Score: 29.261 bits (64), Expect = 2.437e-26 Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1 Query: 154 DLQLERINVYYNRS 195 DLQLERINVYYN + Sbjct: 42 DLQLERINVYYNEA 55
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.164e-26 Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDQTGKYAGD 39 HSP 2 Score: 44.669 bits (104), Expect = 3.164e-26 Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGR+VPRAVLMDLEPGTM Sbjct: 53 EASGGRFVPRAVLMDLEPGTM 73 HSP 3 Score: 30.4166 bits (67), Expect = 3.164e-26 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 145 GVEDLQLERINVYYNRS 195 G DLQLERINVYYN + Sbjct: 38 GDSDLQLERINVYYNEA 54
BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.164e-26 Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143 MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD 39 HSP 2 Score: 44.669 bits (104), Expect = 3.164e-26 Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2 Query: 191 EASGGRYVPRAVLMDLEPGTM 253 EASGGR+VPRAVLMDLEPGTM Sbjct: 53 EASGGRFVPRAVLMDLEPGTM 73 HSP 3 Score: 30.8018 bits (68), Expect = 3.164e-26 Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 142 TGVEDLQLERINVYYNRS 195 +G DLQLERINVYYN + Sbjct: 37 SGDSDLQLERINVYYNEA 54 The following BLAST results are available for this feature:
BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 219
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bpback to top |