CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11134	contig	Csv1_Contig11134:898..1151.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 3.173e-26
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGD 39

HSP 2 Score: 46.2098 bits (108), Expect = 3.173e-26
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGRYVPRAVLMDLEPGTM
Sbjct:   53 EASGGRYVPRAVLMDLEPGTM 73

HSP 3 Score: 29.261 bits (64), Expect = 3.173e-26
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            +G  +LQLERINVYYN +
Sbjct:   37 SGDSELQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.106e-26
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGD 39

HSP 2 Score: 44.669 bits (104), Expect = 4.106e-26
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGR+VPRAVLMDLEPGTM
Sbjct:   53 EASGGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 4.106e-26
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.106e-26
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGD 39

HSP 2 Score: 44.669 bits (104), Expect = 4.106e-26
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGR+VPRAVLMDLEPGTM
Sbjct:   53 EASGGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 4.106e-26
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.328e-26
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG+Y GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDGTGRYAGD 39

HSP 2 Score: 44.669 bits (104), Expect = 5.328e-26
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EASGGR+VPRAVLMDLEPGTM
Sbjct:   53 EASGGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 5.328e-26
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            G+    G  DLQLERINVYYN +
Sbjct:   32 GTGRYAGDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.969e-26
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIG+KFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTG 38

HSP 2 Score: 41.2022 bits (95), Expect = 8.969e-26
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 33.113 bits (74), Expect = 8.969e-26
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG  DLQLER+NVYYN +
Sbjct:   37 TGTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.971e-26
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIG+KFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTG 38

HSP 2 Score: 41.2022 bits (95), Expect = 8.971e-26
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 33.113 bits (74), Expect = 8.971e-26
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG  DLQLER+NVYYN +
Sbjct:   37 TGTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.971e-26
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIG+KFWEV+CDEHG+DPTG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTG 38

HSP 2 Score: 41.2022 bits (95), Expect = 8.971e-26
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 33.113 bits (74), Expect = 8.971e-26
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG  DLQLER+NVYYN +
Sbjct:   37 TGTSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB3_ELEIN (Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.164e-25
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGD 39

HSP 2 Score: 43.1282 bits (100), Expect = 1.164e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA GGR+VPRAVLMDLEPGTM
Sbjct:   53 EAGGGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 30.4166 bits (67), Expect = 1.164e-25
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVYYN +
Sbjct:   38 GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.511e-25
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+CDEHG+DPTG+Y G+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGN 39

HSP 2 Score: 41.2022 bits (95), Expect = 1.511e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.9574 bits (71), Expect = 1.511e-25
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG  DLQLER+NVYYN +
Sbjct:   37 TGNSDLQLERVNVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.511e-25
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREILHIQGGQCGNQIG+KFWEV+CDEHG+DPTG+Y G+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGN 39

HSP 2 Score: 41.2022 bits (95), Expect = 1.511e-25
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+VPRAVLMDLEPGTM
Sbjct:   53 EASCGRFVPRAVLMDLEPGTM 73

HSP 3 Score: 31.9574 bits (71), Expect = 1.511e-25
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            TG  DLQLER+NVYYN +
Sbjct:   37 TGNSDLQLERVNVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB3_SOYBN	3.173e-26	89.74	Tubulin beta chain (Fragment) OS=Glycine max GN=TU...	[more]
TBB7_MAIZE	4.106e-26	89.74	Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=...	[more]
TBB1_ELEIN	4.106e-26	89.74	Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P...	[more]
TBB4_WHEAT	5.328e-26	87.18	Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4...	[more]
TBB2_ELEIN	8.969e-26	86.84	Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 P...	[more]
TBB_HORVU	8.971e-26	86.84	Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2...	[more]
TBB2_WHEAT	8.971e-26	86.84	Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2...	[more]
TBB3_ELEIN	1.164e-25	89.74	Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 P...	[more]
TBB6_MAIZE	1.511e-25	84.62	Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=...	[more]
TBB4_ORYSJ	1.511e-25	84.62	Tubulin beta-4 chain OS=Oryza sativa subsp. japoni...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA