CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.790e-23
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGTYSGD 39

HSP 2 Score: 44.669 bits (104), Expect = 7.790e-23
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 26.9498 bits (58), Expect = 7.790e-23
Identity = 10/18 (55.56%), Postives = 15/18 (83.33%), Query Frame = 1

Query:  142 TGVEDLQLERINVYYNRS 195
            +G  DLQLER++V+YN +
Sbjct:   37 SGDSDLQLERVDVFYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.790e-23
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRG 140
            MREILHIQGGQCGNQIG+KFWEVIC EH VD TG+Y G
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHCVDSTGRYSG 38

HSP 2 Score: 44.669 bits (104), Expect = 7.790e-23
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA GGRYVPRAVLMDLEPGTM
Sbjct:   55 EAGGGRYVPRAVLMDLEPGTM 75

HSP 3 Score: 28.1054 bits (61), Expect = 7.790e-23
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 1

Query:  127 GSIEVTGVEDLQLERINVYYNRS 195
            G    T  + L+LERINVYYN +
Sbjct:   34 GRYSGTSSQQLELERINVYYNEA 56

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.792e-23
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MRE++HIQGGQCGNQIG+KFWEVI DEHGVDPTG Y GD
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGD 39

HSP 2 Score: 36.1946 bits (82), Expect = 7.792e-23
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2

Query:  203 GRYVPRAVLMDLEPGTM 253
            G YVPRA+LMDLEPGTM
Sbjct:   56 GTYVPRAILMDLEPGTM 72

HSP 3 Score: 31.187 bits (69), Expect = 7.792e-23
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERINVYYN +
Sbjct:   32 PTGSYH--GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB7_CHICK (Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_XENTR (Tubulin beta chain OS=Xenopus tropicalis GN=tubb PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_XENLA (Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_RAT (Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_PONAB (Tubulin beta chain OS=Pongo abelii GN=TUBB PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_PIG (Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_PANTR (Tubulin beta chain OS=Pan troglodytes GN=TUBB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB_PLAFA	7.790e-23	79.49	Tubulin beta chain OS=Plasmodium falciparum PE=3 S...	[more]
TBB4_MAIZE	7.790e-23	84.21	Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=...	[more]
TBB_ACHKL	7.792e-23	84.62	Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1	[more]
TBB7_CHICK	1.010e-22	82.05	Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1	[more]
TBB5_XENTR	1.010e-22	82.05	Tubulin beta chain OS=Xenopus tropicalis GN=tubb P...	[more]
TBB5_XENLA	1.010e-22	82.05	Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 ...	[more]
TBB5_RAT	1.010e-22	82.05	Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5...	[more]
TBB5_PONAB	1.010e-22	82.05	Tubulin beta chain OS=Pongo abelii GN=TUBB PE=2 SV...	[more]
TBB5_PIG	1.010e-22	82.05	Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1	[more]
TBB5_PANTR	1.010e-22	82.05	Tubulin beta chain OS=Pan troglodytes GN=TUBB PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA