CF504111 | Citrus Genome Database

Overview


Name	CF504111
Unique Name	CF504111
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	256

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_MOUSE (Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_MACMU (Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_HUMAN (Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_CRIGR (Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.010e-22
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGD 39

HSP 2 Score: 41.9726 bits (97), Expect = 1.010e-22
Identity = 17/21 (80.95%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GG+YVPRA+L+DLEPGTM
Sbjct:   53 EATGGKYVPRAILVDLEPGTM 73

HSP 3 Score: 27.335 bits (59), Expect = 1.010e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQL+RI+VYYN +
Sbjct:   38 GDSDLQLDRISVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_XENLA (Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.310e-22
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD 39

HSP 2 Score: 38.1206 bits (87), Expect = 1.310e-22
Identity = 15/21 (71.43%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+G ++VPRA+L+DLEPGTM
Sbjct:   53 EATGNKFVPRAILVDLEPGTM 73

HSP 3 Score: 31.187 bits (69), Expect = 1.310e-22
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 1

Query:  121 PRGSIEVTGVEDLQLERINVYYNRS 195
            P GS    G  DLQLERINVYYN +
Sbjct:   32 PTGSYH--GDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.310e-22
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQGGQCGNQIG+KFWEV+ DEHG+DPTG   GD
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTALGD 39

HSP 2 Score: 42.3578 bits (98), Expect = 1.310e-22
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+G RYVPRA+LMDLEPGTM
Sbjct:   53 EATGSRYVPRAILMDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 1.310e-22
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLERINVY+N +
Sbjct:   38 GDSDLQLERINVYFNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.311e-22
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIGSKFWEVI DEHG+DPTG+Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGQYVGD 39

HSP 2 Score: 37.3502 bits (85), Expect = 1.311e-22
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA   +YVPRAVL+DLEPGTM
Sbjct:   53 EAGSNKYVPRAVLVDLEPGTM 73

HSP 3 Score: 30.8018 bits (68), Expect = 1.311e-22
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1

Query:  136 EVTGVEDLQLERINVYYNRS 195
            +  G  DLQLERINVYYN +
Sbjct:   35 QYVGDSDLQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.698e-22
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MRE LHIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD
Sbjct:    1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGD 39

HSP 2 Score: 37.7354 bits (86), Expect = 1.698e-22
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EAS GR+V RAVLMDLEPGTM
Sbjct:   53 EASCGRFVRRAVLMDLEPGTM 73

HSP 3 Score: 28.8758 bits (63), Expect = 1.698e-22
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  +LQLERINVYYN +
Sbjct:   38 GDSELQLERINVYYNEA 54

[Close]

BLAST of CF504111 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.699e-22
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query:   27 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD 143
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGTYCGD 39

HSP 2 Score: 44.669 bits (104), Expect = 1.699e-22
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  191 EASGGRYVPRAVLMDLEPGTM 253
            EA+GGRYVPRA+LMDLEPGTM
Sbjct:   53 EATGGRYVPRAILMDLEPGTM 73

HSP 3 Score: 26.5646 bits (57), Expect = 1.699e-22
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 1

Query:  145 GVEDLQLERINVYYNRS 195
            G  DLQLER++V+YN +
Sbjct:   38 GDSDLQLERVDVFYNEA 54

The following BLAST results are available for this feature:

BLAST of CF504111 vs. ExPASy Swiss-Prot

BLAST of CF504111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219


Match Name	E-value	Identity	Description
TBB5_MOUSE	1.010e-22	82.05	Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1...	[more]
TBB5_MACMU	1.010e-22	82.05	Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 ...	[more]
TBB5_HUMAN	1.010e-22	82.05	Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV...	[more]
TBB5_CRIGR	1.010e-22	82.05	Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB...	[more]
TBB5_BOVIN	1.010e-22	82.05	Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 S...	[more]
TBB2_XENLA	1.310e-22	79.49	Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE...	[more]
TBB_POLAG	1.310e-22	79.49	Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ...	[more]
TBB1_CAEBR	1.311e-22	84.62	Tubulin beta-1 chain OS=Caenorhabditis briggsae GN...	[more]
TBB2_SOYBN	1.698e-22	82.05	Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ...	[more]
TBB_PLAFK	1.699e-22	79.49	Tubulin beta chain OS=Plasmodium falciparum (isola...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-599 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504111 ID=CF504111; Name=CF504111; organism=Citrus sinensis; type=EST; length=256bp
CTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTCAA
GGAGGCCAATGCGGCAACCAAATCGGATCCAAATTCTGGGAAGTCATTTG
CGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACCGGGGTT
GAGGATCTTCAACTGGAGCGGATCAATGTCTACTACAACCGAAGCTTCCG
GTGGAAGGTACGTGCCTCGGGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGGA